a4

This is the development version of a4; for the stable release version, see a4.

Automated Affymetrix Array Analysis Umbrella Package

Bioconductor version: Development (3.24)

Umbrella package is available for the entire Automated Affymetrix Array Analysis suite of package.

Author: Willem Talloen [aut], Tobias Verbeke [aut], Laure Cougnaud [cre]

Maintainer: Laure Cougnaud <laure.cougnaud at openanalytics.eu>

Citation (from within R, enter citation("a4")):

Seminal Bioconductor project articles:

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.

Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("a4")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("a4")

a4vignette	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Microarray, Software
Version	1.61.0
In Bioconductor since	BioC 2.8 (R-2.13) (15.5 years)
License	GPL-3
Depends	a4Base, a4Preproc, a4Classif, a4Core, a4Reporting
Imports
System Requirements
URL

Suggests	MLP, nlcv, ALL, Cairo, Rgraphviz, GOstats, hgu95av2.db
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	a4_1.61.0.tar.gz
Windows Binary (x86_64)	a4_1.61.0.zip
macOS Binary (big-sur-x86_64)	a4_1.61.0.tgz
macOS Binary (sonoma-arm64)	a4_1.61.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/a4
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/a4
Bioc Package Browser	https://code.bioconductor.org/browse/a4/
Package Short Url	https://bioconductor.org/packages/a4/
Package Downloads Report	Download Stats