a4Base
This is the development version of a4Base; for the stable release version, see a4Base.
Automated Affymetrix Array Analysis Base Package
Bioconductor version: Development (3.24)
Base utility functions are available for the Automated Affymetrix Array Analysis set of packages.
Author: Willem Talloen [aut], Tine Casneuf [aut], An De Bondt [aut], Steven Osselaer [aut], Hinrich Goehlmann [aut], Willem Ligtenberg [aut], Tobias Verbeke [aut], Laure Cougnaud [cre]
Maintainer: Laure Cougnaud <laure.cougnaud at openanalytics.eu>
citation("a4Base")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("a4Base")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Microarray, Software |
| Version | 1.61.1 |
| In Bioconductor since | BioC 2.8 (R-2.13) (15.5 years) |
| License | GPL-3 |
| Depends | a4Preproc, a4Core |
| Imports | methods, graphics, grid, Biobase, annaffy, mpm, genefilter, limma, multtest, glmnet, gplots |
| System Requirements | |
| URL |
See More
| Suggests | Cairo, ALL, hgu95av2.db, nlcv |
| Linking To | |
| Enhances | gridSVG, JavaGD |
| Depends On Me | a4 |
| Imports Me | |
| Suggests Me | epimutacions, MosaiClusteR |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | a4Base_1.61.1.tar.gz |
| Windows Binary (x86_64) | a4Base_1.61.1.zip |
| macOS Binary (big-sur-x86_64) | a4Base_1.61.1.tgz |
| macOS Binary (sonoma-arm64) | a4Base_1.61.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/a4Base |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/a4Base |
| Bioc Package Browser | https://code.bioconductor.org/browse/a4Base/ |
| Package Short Url | https://bioconductor.org/packages/a4Base/ |
| Package Downloads Report | Download Stats |