Rgraphviz
This is the development version of Rgraphviz; for the stable release version, see Rgraphviz.
Provides plotting capabilities for R graph objects
Bioconductor version: Development (3.24)
Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.
Author: Kasper Daniel Hansen [cre, aut], Jeff Gentry [aut], Li Long [aut], Robert Gentleman [aut], Seth Falcon [aut], Florian Hahne [aut], Deepayan Sarkar [aut]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
citation("Rgraphviz")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("Rgraphviz")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rgraphviz")| A New Interface to Plot Graphs Using Rgraphviz | R Script | |
| How To Plot A Graph Using Rgraphviz | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GraphAndNetwork, Software, Visualization |
| Version | 2.57.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 21 years) |
| License | EPL |
| Depends | R (>= 2.6.0), methods, utils, graph, grid |
| Imports | stats4, graphics, grDevices |
| System Requirements | optionally Graphviz (>= 2.16), USE_C17 |
| URL |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rgraphviz_2.57.0.tar.gz |
| Windows Binary (x86_64) | Rgraphviz_2.57.0.zip |
| macOS Binary (big-sur-x86_64) | Rgraphviz_2.57.0.tgz |
| macOS Binary (sonoma-arm64) | Rgraphviz_2.57.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rgraphviz |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rgraphviz |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rgraphviz/ |
| Package Short Url | https://bioconductor.org/packages/Rgraphviz/ |
| Package Downloads Report | Download Stats |