XVector
This is the released version of XVector; for the devel version, see XVector.
Foundation of external vector representation and manipulation in Bioconductor
Bioconductor version: Release (3.23)
Provides memory efficient S4 classes for storing sequences "externally" (e.g. behind an R external pointer, or on disk).
Author: Hervé Pagès and Patrick Aboyoun
Maintainer: Hervé Pagès <hpages.on.github at gmail.com>
citation("XVector")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("XVector")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataRepresentation, Infrastructure, Software |
| Version | 0.52.0 |
| In Bioconductor since | BioC 2.13 (R-3.0) (13 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0.0), methods, BiocGenerics(>= 0.37.0), S4Vectors(>= 0.27.12), IRanges(>= 2.43.8) |
| Imports | methods, utils, stats, tools, BiocGenerics, S4Vectors, IRanges |
| System Requirements | |
| URL | https://bioconductor.org/packages/XVector |
| Bug Reports | https://github.com/Bioconductor/XVector/issues |
See More
| Suggests | Biostrings, drosophila2probe, RUnit |
| Linking To | S4Vectors, IRanges |
| Enhances | |
| Depends On Me | Biostrings, triplex |
| Imports Me | Bioc.gff, BSgenome, ChIPsim, CNEr, compEpiTools, crisprScore, dada2, DECIPHER, gcrma, GenomAutomorphism, GenomicFeatures, Gviz, HiLDA, IONiseR, IsoformSwitchAnalyzeR, kebabs, MatrixRider, Modstrings, monaLisa, ProteoDisco, R453Plus1Toolbox, ribosomeProfilingQC, Rsamtools, rtracklayer, SparseArray, Structstrings, TFBSTools, tracktables, tRNA, tRNAscanImport, VariantAnnotation, MiscMetabar |
| Suggests Me | CNVMetrics, fastRanges, IRanges, IWTomics, LOLA, musicatk, inDAGO |
| Links To Me | Bioc.gff, Biostrings, CNEr, DECIPHER, kebabs, MatrixRider, posDemux, pwalign, Rsamtools, rtracklayer, ShortRead, SparseArray, triplex, VariantAnnotation, VariantFiltering |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | XVector_0.52.0.tar.gz |
| Windows Binary (x86_64) | XVector_0.52.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | XVector_0.52.0.tgz |
| macOS Binary (sonoma-arm64) | XVector_0.52.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/XVector |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/XVector |
| Bioc Package Browser | https://code.bioconductor.org/browse/XVector/ |
| Package Short Url | https://bioconductor.org/packages/XVector/ |
| Package Downloads Report | Download Stats |