InteractiveComplexHeatmap
This is the released version of InteractiveComplexHeatmap; for the devel version, see InteractiveComplexHeatmap.
Make Interactive Complex Heatmaps
Bioconductor version: Release (3.23)
This package can easily make heatmaps which are produced by the ComplexHeatmap package into interactive applications. It provides two types of interactivities: 1. on the interactive graphics device, and 2. on a Shiny app. It also provides functions for integrating the interactive heatmap widgets for more complex Shiny app development.
Maintainer: Zuguang Gu <guzuguang at suat-sz.edu.cn>
citation("InteractiveComplexHeatmap")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("InteractiveComplexHeatmap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("InteractiveComplexHeatmap")| The InteractiveComplexHeatmap package | HTML |
| Reference Manual | |
| NEWS | Text |
| LICENSE | Text |
Details
| biocViews | Sequencing, Software, Visualization |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0.0), ComplexHeatmap(>= 2.11.0) |
| Imports | grDevices, stats, shiny, grid, GetoptLong, S4Vectors(>= 0.26.1), digest, IRanges, kableExtra (>= 1.3.1), utils, svglite, htmltools, clisymbols, jsonlite, RColorBrewer, fontawesome |
| System Requirements | |
| URL | https://github.com/jokergoo/InteractiveComplexHeatmap |
| Bug Reports | https://github.com/jokergoo/InteractiveComplexHeatmap/issues |
See More
| Suggests | knitr, rmarkdown, testthat, EnrichedHeatmap, GenomicRanges, data.table, circlize, GenomicFeatures, tidyverse, tidyHeatmap, cluster, org.Hs.eg.db, simplifyEnrichment, GO.db, SC3, GOexpress, SingleCellExperiment, scater, gplots, pheatmap, airway, DESeq2, DT, cola, BiocManager, gridtext, HilbertCurve(>= 1.21.1), shinydashboard, SummarizedExperiment, pkgndep, ks |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | CRISPRball, gINTomics, goatea, mineSweepR |
| Suggests Me | CTexploreR, simona, simplifyEnrichment, dtGAP, metasnf |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | InteractiveComplexHeatmap_1.20.0.tar.gz |
| Windows Binary (x86_64) | InteractiveComplexHeatmap_1.20.0.zip |
| macOS Binary (big-sur-x86_64) | InteractiveComplexHeatmap_1.20.0.tgz |
| macOS Binary (sonoma-arm64) | InteractiveComplexHeatmap_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/InteractiveComplexHeatmap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/InteractiveComplexHeatmap |
| Bioc Package Browser | https://code.bioconductor.org/browse/InteractiveComplexHeatmap/ |
| Package Short Url | https://bioconductor.org/packages/InteractiveComplexHeatmap/ |
| Package Downloads Report | Download Stats |