ComplexHeatmap
This is the released version of ComplexHeatmap; for the devel version, see ComplexHeatmap.
Make Complex Heatmaps
Bioconductor version: Release (3.23)
Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.
Maintainer: Zuguang Gu <guzuguang at suat-sz.edu.cn>
citation("ComplexHeatmap")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ComplexHeatmap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ComplexHeatmap")| complex_heatmap.html | HTML | |
| Most probably asked questions | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Sequencing, Software, Visualization |
| Version | 2.28.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (11.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0.0), methods, grid, graphics, stats, grDevices |
| Imports | circlize (>= 0.4.14), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), png, digest, IRanges, matrixStats, foreach, doParallel, codetools |
| System Requirements | |
| URL | https://github.com/jokergoo/ComplexHeatmap https://jokergoo.github.io/ComplexHeatmap-reference/book/ |
See More
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ComplexHeatmap_2.28.0.tar.gz |
| Windows Binary (x86_64) | ComplexHeatmap_2.28.0.zip |
| macOS Binary (big-sur-x86_64) | ComplexHeatmap_2.28.0.tgz |
| macOS Binary (sonoma-arm64) | ComplexHeatmap_2.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ComplexHeatmap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ComplexHeatmap |
| Bioc Package Browser | https://code.bioconductor.org/browse/ComplexHeatmap/ |
| Package Short Url | https://bioconductor.org/packages/ComplexHeatmap/ |
| Package Downloads Report | Download Stats |