pumadata
This is the released version of pumadata; for the devel version, see pumadata.
Various data sets for use with the puma package
Bioconductor version: Release (3.23)
This is a simple data package including various data sets derived from the estrogen data for use with the puma (Propagating Uncertainty in Microarray Analysis) package.
Author: Richard Pearson
Maintainer: Xuejun liu <xuejun.liu at nuaa.edu.cn>
citation("pumadata")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pumadata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pumadata")| pumadata User Guide | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, MicroarrayData, SNPData |
| Version | 2.48.0 |
| License | LGPL |
| Depends | R (>= 3.2.0), Biobase(>= 2.5.5), puma, oligo(>= 1.32.0) |
| Imports | |
| System Requirements | |
| URL | http://umber.sbs.man.ac.uk/resources/puma |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | puma |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pumadata_2.48.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/pumadata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pumadata |
| Package Short Url | https://bioconductor.org/packages/pumadata/ |
| Package Downloads Report | Download Stats |