geneLenDataBase
This is the released version of geneLenDataBase; for the devel version, see geneLenDataBase.
Lengths of mRNA transcripts for a number of genomes
Bioconductor version: Release (3.23)
Length of mRNA transcripts for a number of genomes and gene ID formats, largely based on UCSC table browser. Data objects are provided as individual pieces of information to be retrieved and loaded. A variety of different gene identifiers and genomes is supported to ensure wide applicability.
Author: Matthew Young [aut], Nadia Davidson [aut], Federico Marini [ctb, cre]
Maintainer: Federico Marini <marinif at uni-mainz.de>
citation("geneLenDataBase")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("geneLenDataBase")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | ExperimentData, Genome |
| Version | 1.48.0 |
| License | LGPL (>= 2) |
| Depends | R (>= 2.11.0) |
| Imports | utils, rtracklayer, GenomicFeatures, txdbmaker |
| System Requirements | |
| URL | https://github.com/federicomarini/geneLenDataBase |
| Bug Reports | https://github.com/federicomarini/geneLenDataBase/issues |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | goseq |
| Imports Me | SMITE |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | geneLenDataBase_1.48.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/geneLenDataBase |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/geneLenDataBase |
| Package Short Url | https://bioconductor.org/packages/geneLenDataBase/ |
| Package Downloads Report | Download Stats |