estrogen
This is the released version of estrogen; for the devel version, see estrogen.
Microarray dataset that can be used as example for 2x2 factorial designs
Bioconductor version: Release (3.23)
Data from 8 Affymetrix genechips, looking at a 2x2 factorial design (with 2 repeats per level).
Author: Wolfgang Huber, Robert Gentleman
Maintainer: Wolfgang Huber <wolfgang.huber at embl.de>
citation("estrogen")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("estrogen")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("estrogen")| estrogen | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, MicroarrayData |
| Version | 1.58.0 |
| License | LGPL |
| Depends | |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | affy, hgu95av2.db, hgu95av2cdf, vsn, knitr, genefilter |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | categoryCompare |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | estrogen_1.58.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/estrogen |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/estrogen |
| Package Short Url | https://bioconductor.org/packages/estrogen/ |
| Package Downloads Report | Download Stats |