epimutacionsData
This is the released version of epimutacionsData; for the devel version, see epimutacionsData.
Data for epimutacions package
Bioconductor version: Release (3.23)
This package includes the data necessary to run functions and examples in epimutacions package. Collection of DNA methylation data. The package contains 2 datasets: (1) Control ( GEO: GSE104812), (GEO: GSE97362) case samples; and (2) reference panel (GEO: GSE127824). It also contains candidate regions to be epimutations in 450k methylation arrays.
Author: Leire Abarrategui [aut, cre], Juan R. Gonzalez [aut], Carlos Ruiz-Arenas [aut], Carles Hernandez-Ferrer [aut]
Maintainer: Leire Abarrategui <abarrategui.leire at gmail.com>
citation("epimutacionsData")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epimutacionsData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epimutacionsData")| data repository for epimutacions package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylationArrayData, MicroarrayData |
| Version | 1.16.0 |
| License | MIT + file LICENSE |
| Depends | R (>= 4.2.0) |
| Imports | |
| System Requirements | |
| URL | https://github.com/LeireAbarrategui/epimutacionsData |
| Bug Reports | https://github.com/LeireAbarrategui/epimutacionsData/issues |
See More
| Suggests | rmarkdown, BiocStyle, knitr, ExperimentHub, minfi |
| Linking To | |
| Enhances | |
| Depends On Me | epimutacions |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | epimutacionsData_1.16.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/epimutacionsData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/epimutacionsData |
| Package Short Url | https://bioconductor.org/packages/epimutacionsData/ |
| Package Downloads Report | Download Stats |