MethylAidData
This is the released version of MethylAidData; for the devel version, see MethylAidData.
MethylAid-summarized data for 2800 Illumina 450k array samples and 2620 EPIC array samples
Bioconductor version: Release (3.23)
A data package containing summarized Illumina 450k array data on 2800 samples and summarized EPIC data for 2620 samples. The data can be use as a background data set in the interactive application.
Author: Davy Cats, Tyler J. Gorrie-Stone, Bastiaan T. Heijmans, John W. Holloway, BIOS Consortium, Maarten van Iterson, Faisal I. Rezwam, Leonard Schalkwyk
Maintainer: M. van Iterson <mviterson at gmail.com>
citation("MethylAidData")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MethylAidData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MethylAidData")| MethylAid-summarized data on 2800 Illumina 450k array samples | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, MethylationArrayData, MicroarrayData, TechnologyData |
| Version | 1.44.0 |
| License | GPL (>= 2) |
| Depends | MethylAid, R (>= 3.2) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocParallel, BiocStyle, knitr, minfiData, minfiDataEPIC |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | MethylAid |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MethylAidData_1.44.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MethylAidData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MethylAidData |
| Package Short Url | https://bioconductor.org/packages/MethylAidData/ |
| Package Downloads Report | Download Stats |