HumanAffyData
This is the released version of HumanAffyData; for the devel version, see HumanAffyData.
GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects
Bioconductor version: Release (3.23)
Re-analysis of human gene expression data generated on the Affymetrix HG_U133PlusV2 (EH176) and Affymetrix HG_U133A (EH177) platforms. The original data were normalized using robust multiarray averaging (RMA) to obtain an integrated gene expression atlas across diverse biological sample types and conditions. The entire compendia comprisee 9395 arrays for EH176 and 5372 arrays for EH177.
Author: Brad Nelms
Maintainer: Brad Nelms <bnelms.research at gmail.com>
citation("HumanAffyData")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HumanAffyData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HumanAffyData")| Intro to the HumanAffyData package | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ArrayExpress, ExperimentData, ExpressionData, GEO, Homo_sapiens_Data, MicroarrayData |
| Version | 1.38.0 |
| License | Artistic-2.0 |
| Depends | ExperimentHub, Biobase, R (>= 3.3) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | CellMapper |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HumanAffyData_1.38.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HumanAffyData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HumanAffyData |
| Package Short Url | https://bioconductor.org/packages/HumanAffyData/ |
| Package Downloads Report | Download Stats |