UniProtKeywords
This is the released version of UniProtKeywords; for the devel version, see UniProtKeywords.
Keywords from UniProt Database
Bioconductor version: Release (3.23)
UniProt database provides a list of controlled vocabulary represented as keywords for genes or proteins. This is useful for summarizing gene functions in a compact way. This package provides data of keywords hierarchy and gene-keyword relations.
Maintainer: Zuguang Gu <guzuguang at suat-sz.edu.cn>
citation("UniProtKeywords")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("UniProtKeywords")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("UniProtKeywords")| Keywords from the UniProt database | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | AnnotationData, Homo_sapiens, Organism |
| Version | 0.99.8 |
| License | MIT + file LICENSE |
| Depends | R (>= 4.0.0) |
| Imports | utils |
| System Requirements | |
| URL | https://github.com/jokergoo/UniProtKeywords https://www.uniprot.org/keywords/ |
| Bug Reports | https://github.com/jokergoo/UniProtKeywords/issues |
See More
| Suggests | knitr, rmarkdown, markdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | simona |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | UniProtKeywords_0.99.8.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/UniProtKeywords/ |
| Package Downloads Report | Download Stats |