Package: csawBook
Version: 1.20.0
Date: 2024-04-17
Title: The Book of csaw
Authors@R: person("Aaron", "Lun", role=c("aut", "cre"), email =
    "infinite.monkeys.with.keyboards@gmail.com")
Depends: BiocFileCache, ChIPpeakAnno, chipseqDBData, csaw, edgeR, Gviz,
        org.Mm.eg.db, rebook, rmarkdown, Rsamtools, rtracklayer,
        TxDb.Mmusculus.UCSC.mm10.knownGene
biocViews: Workflow, EpigeneticsWorkflow
Description: 
    Describes how to use the csaw package to detect differentially bound regions in ChIP-seq data. 
    This provides instructions on how to read in BAM files to obtain a per-window count matrix, 
    filtering to obtain high-abundance windows of interest, 
    normalization of sample-specific biases, testing for differential binding, 
    consolidation of per-window results to obtain per-region statistics,
    and annotation and visualization of the DB results.
License: GPL-3
VignetteBuilder: knitr
BiocType: Book
git_url: https://git.bioconductor.org/packages/csawBook
git_branch: RELEASE_3_23
git_last_commit: 7cd2344
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-29
NeedsCompilation: no
Packaged: 2026-04-29 15:45:23 UTC; biocbuild
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards@gmail.com>
