bf7e1e941de02de2452f4458b1138b9d *DESCRIPTION
6e08034f74f8210c129eeecbc14b72cf *NAMESPACE
d017511814a32c5f88e06ba2ee9256da *NEWS
f03e95fb768e7cbf56de86d8c44d14db *R/ChipDataSet-class.R
5442b848292410e0d27c91fe45e80d93 *R/ChipDataSet-generics.R
b5dc5b0e38ab2d31cf0a7caa8508100d *R/ChipDataSet-methods.R
191b13ae82374172e9b836c21403026d *R/TranscriptionDataSet-class.R
936ecbfc9c173ca6e8fee1328cb51642 *R/TranscriptionDataSet-generics.R
dd9588320b77d8d92604eab2d70545e6 *R/TranscriptionDataSet-methods.R
e4bd8ab5995060a66698be1417779c46 *R/show.R
9f29300f184cc084c1f0d2365a762a03 *R/utils.R
9e33f797e139cdfc6557757eb784249f *build/vignette.rds
4658c716fa582e260d123e46b4df9089 *data/annot.rda
33f3b8dc34c8ba6ab0a4daa3ea3aa37e *data/cds.rda
1b1ba5e803d213909fdfda9ee7ef6fd4 *data/datalist
ad6b7f2211a32a6cbb18b290303e8cad *data/tds.rda
835ee3aee8597c8cf65b65675a7c168a *inst/doc/transcriptR.R
3b36062fa7b29ac2c1ef2b22223187df *inst/doc/transcriptR.Rmd
8be238a2ba693e796bb7470962db96c7 *inst/doc/transcriptR.html
d50801198a9fc94ca2d340ba90cf9e15 *inst/extdata/chip_reads.bam
b1bd75dd1f9641b9e89f1381a486d259 *inst/extdata/chip_reads.bam.bai
7f2999eb7940a0c31d83d3a39444a75b *inst/extdata/peaks.txt
b3efed05f16945956ab43ba1657823da *inst/extdata/rna_reads.bam
1b5a7ab4d4b50c588dc2b61806e1537f *inst/extdata/rna_reads.bam.bai
af0636a9a363488d119dfaf48ef0d741 *man/ChipDataSet-class.Rd
c6e03cb5122b0e457631269d3eec6252 *man/TranscriptionDataSet-class.Rd
d64a2bc1b17b666378f56db76aaafa5f *man/addFeature-methods.Rd
be7dc26d47387f68013b7f64cd087e62 *man/annot.Rd
a15d420493025b9b7d4737e928dccef1 *man/annotateTranscripts-methods.Rd
5e2303a0b60c513750268c99f4d0ac99 *man/breakTranscriptsByPeaks-methods.Rd
07fbb7de85e58ecf0c48d72f37f48a5e *man/cds.Rd
bb481aefb154df122c7b5b7413b9e957 *man/constructCDS.Rd
aa55b121d85744aaca85d67e330c7dd1 *man/constructTDS.Rd
d8ec2c4724997774493db16253a83fe2 *man/detectTranscripts-methods.Rd
6de8010cfdc6b429dd18cccca48f19c9 *man/estimateBackground-methods.Rd
1cdbd115b56ee92fae332ccd8d5f56ce *man/estimateGapDistance-methods.Rd
e8c7be706d591907806649307bfe2b61 *man/exportCoverage-methods.Rd
c07a4956afbca26f0cf6259f114a5743 *man/getConfusionMatrix-methods.Rd
6cd304af8950b79668b2ff47435a1eb0 *man/getGenomicAnnot-methods.Rd
5643479db955dcf105a2bcbe40d0cea8 *man/getPeaks-methods.Rd
712b5ea479e32f96ed4ef9f51ee31cf9 *man/getPredictorSignificance-methods.Rd
b738a92ca1b101c3c583948745432ce8 *man/getProbTreshold-methods.Rd
c69e8a64096e75ff542fefb1f5e648f7 *man/getQuadProb-methods.Rd
4208160dc746bbdb945ba5330e721e4b *man/getTestedGapDistances-methods.Rd
a97cec27b5b29513843a1dc380841c42 *man/getTranscripts-methods.Rd
d45f69dc3b318e4deacf024e39555730 *man/peaksToBed-methods.Rd
5506077168ffc127b2a90052b017222f *man/plotErrorRate-methods.Rd
8bd9919f39d3f7a1f89019ec156e71a4 *man/plotFeatures-methods.Rd
2c75d4ce2003bd74e83e942aa9f1975d *man/plotGenomicAnnot-methods.Rd
d98fcf0a0f9abe2aaa7cfba15c5ff607 *man/plotROC-methods.Rd
053f2daf0b68a1406ea9eeb564185d06 *man/predictStrand-methods.Rd
b139aad0d921f690327fc335eaa0bfa9 *man/predictTssOverlap-methods.Rd
88e926a345df319569cf6eff4ae1158e *man/show.Rd
995df45f62e776a6a63583db6cd00500 *man/tds.Rd
5816b4044e54aa3d4ec694e60a62d5bc *man/transcriptsToBed-methods.Rd
001e83064af681039550030c0b190cd8 *tests/testthat.R
bfa6125f76c6dd8d6bb08fd0db4e0d1e *tests/testthat/test-ChipDataSet-methods.R
31242c72028e57f2695047da078f10fa *tests/testthat/test-TranscriptionDataSet-methods.R
0881263e5aeef87dcef8bc549d9a7046 *tests/testthat/test-objects.R
d38a0471ef63cb6613e7520ff56ab992 *vignettes/images/Average_RNAseq_signal_across_peak_region.png
5ad4edb7fbc29220a56136973a450380 *vignettes/images/Gene_associated_peak_prediction.png
2179acad2c1a36e082834207a53d1e79 *vignettes/images/Main_scheme.png
6071e9a6b3dc0d413839b0cd1f43b99c *vignettes/images/Peak_strandedness_prediction.png
3b36062fa7b29ac2c1ef2b22223187df *vignettes/transcriptR.Rmd
3730fdd1f4ba1845ae8f882c4f30f6f5 *vignettes/transcriptR.bib
