@Article{kalvari2017,
  title = {Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families},
  author = {Kalvari, Ioanna and Argasinska, Joanna and Quinones-Olvera, Natalia and Nawrocki, Eric P and Rivas, Elena and Eddy, Sean R and Bateman, Alex and Finn, Robert D and Petrov, Anton I},
  journal = {Nucleic Acids Research},
  volume = {46},
  number = {D1},
  pages = {D335-D342},
  year = {2017},
  url = {https://doi.org/10.1093/nar/gkx1038},
}

@Article{elgebali2018,
  title = {Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families},
  author = {El-Gebali, Sara and Mistry, Jaina and Bateman, Alex and Eddy, Sean R and Luciani, Aurélien and Potter, Simon C and Qureshi, Matloob and Richardson, Lorna J and Salazar, Gustavo A and Smart, Alfredo and Sonnhammer, Erik L L and Hirsh, Layla and Paladin, Lisanna and Piovesan, Damiano and Tosatto, Silvio C E and Finn, Robert D},
  journal = {Nucleic Acids Research},
  volume = {47},
  number = {D1},
  pages = {D427-D432},
  year = {2018},
  url = {https://doi.org/10.1093/nar/gky995},
}

@Article{nawrocki2013,
  title = {Infernal 1.1: 100-fold faster RNA homology searches},
  author = {Nawrocki, Eric P and Eddy, Sean R},
  journal = {Bioinformatics},
  volume = {29},
  number = {22},
  pages = {2933-2935},
  year = {2013},
  url = {https://doi.org/10.1093/bioinformatics/btt509},
}

@Article{berman2000,
  title = {The Protein Data Bank},
  author = {Berman, Helen M and Westbrook, John and Feng, Zukang and Gilliland, Gary and Bhat, T N and Weissig, Helge and Shindyalov, Ilya N and Bourne, Philip E},
  journal = {Nucleic Acids Research},
  volume = {28},
  number = {1},
  pages = {235-242},
  year = {2000},
  url = {https://doi.org/10.1093/nar/28.1.235},
}

@Article{wang2019,
  title = {Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data},
  author = {Wang, Li-Gen and Lam, Tommy Tsan-Yuk and Xu, Shuangbin and Dai, Zehan and Zhou, Lang and Feng, Tingze and Guo, Pingfan and Dunn, Casey W and Jones, Bradley R and Bradley, Tyler and Zhu, Huachen and Guan, Yi and Jiang, Yong and Yu, Guangchuang},
  journal = {Molecular Biology and Evolution},
  volume = {37},
  number = {2},
  pages = {599-603},
  year = {2019},
  url = {https://doi.org/10.1093/molbev/msz240},
}

@Article{lai2012,
  title = {R- chie : a web server and R package for visualizing RNA secondary structures},
  author = {Lai, Daniel and Proctor, Jeff R and Zhu, Jing Yun A and Meyer, Irmtraud M},
  journal = {Nucleic Acids Research},
  volume = {40},
  number = {12},
  pages = {e95-e95},
  year = {2012},
  url = {https://doi.org/10.1093/nar/gks241},
}
