a4b530f065498a7c4a2d2dd9c082f632 *DESCRIPTION
31439155d9b5c2264276d1f5a3b714cd *NAMESPACE
1bb9cee25d8ebc6cf98b1c283600b46c *NEWS
29e0673d7c32ec81356552e4b0b42954 *NEWS.md
7c4db114e00d47d8efde90c6a5dc2bc8 *R/AllGenerics.R
8118c38bb0fff8777b7c58220faf72c1 *R/Date.R
740d82a56cf74c111f9ea6a4d8ad377e *R/as.polytomy.R
9278116916d454666f2cdf86456b2955 *R/axis.R
acf5096ea55343e03a7b38bfab44f318 *R/clade-functions.R
e61e22ecf67c9e2747f3c5af3dd2b409 *R/defunct.R
60ee83df223992f40f4aef9876b0993a *R/experimental_function.R
40791efa7f22acd6411f092f32e539d2 *R/facet-utilities.R
810b94082d45d731c257432fd7242e9e *R/facet_plot.R
4912c325b393d8f938ba4ed5af09413b *R/format.R
428d1954833ec1816916ee5cfae90c1f *R/fortify-utilities.R
61479a0f81b3a4bd53acc14876ff7c99 *R/geom-zoom-clade.R
c3ffbe94ee860513036b816e35ade6cc *R/geom_balance.R
dff57bf19d810c2283e57519cef6c1ee *R/geom_cladelab.R
64a7550e58777a569837ed8f81a144ed *R/geom_cladelabel.R
f98efb7fc9ad454fae6d36a7cbdada18 *R/geom_cladelabel2.R
509e5b1d36a8d7762aeeff3736369437 *R/geom_hilight.R
c0f95c4e85529456768ea211b04f1185 *R/geom_hilight_encircle.R
c6bd07831a5819e8e757503ae7b32f0a *R/geom_interactive.R
678930b6e28ccc4d2abfc10559a1f1a7 *R/geom_label.R
92b7e6a3b7b6a4119a100a10bb4260ce *R/geom_nodelab.R
6631b5606941048624d7449da672f188 *R/geom_point.R
9363a3cd2dc3094e4bb9107a8fa18cdc *R/geom_range.R
0a432372993f500311b6572334234818 *R/geom_rootedge.R
5226e27c8f8eb71ad527b38814ba5fcd *R/geom_segment.R
9cc16ef42e4f3c65934b642031d403f2 *R/geom_strip.R
5325fb9f425cec282a6a5a0299aaca62 *R/geom_taxalink.R
8dfdd191ae343ce0d8499a08369b8ccc *R/geom_text.R
1c3f77fd89fe9218bb1ece5dfdd3faa1 *R/geom_tiplab.R
699a0b38918797a75747a622a4c09946 *R/geom_tree.R
05d98258f53b41705b263a3527f0cff0 *R/geom_treescale.R
b613ac3652a24767bc666669198bddd3 *R/ggdensitree.R
6e1f2bd084c1ef4497e10f9463530060 *R/ggplot-add-utilities.R
66965bec060f386fea9620eaf1b7fa19 *R/ggtree-package.R
87aa435e823fde283ba81b5ff588da57 *R/ggtree.R
f31f19b2fc2a4c04d8c6f81b2943facd *R/gheatmap.R
aa61de04048c7b0ccfd51b212a4a1617 *R/inset.R
3a3cdb44c80c3aa53528ea2f420451e8 *R/layout.R
aa3bd2f06b7eb469600fb9c7bbc1ff66 *R/method-MRCA.R
5072421d83d1847b6cf77aded66c1e35 *R/method-fortify.R
aa07151f10aac999e9528c8d59c26394 *R/method-ggplot-add.R
e770852178dedc0ab2047ff86eac600d *R/method-groupClade.R
d04f92d38f6e5de8bb7501a5dc1f6f9b *R/method-groupOTU.R
bc81e05353b9450e0af6d2c34ffa638d *R/method-nodeid.R
982ef15a89266e4f5c3b12f1a8e219f2 *R/method-offspring.R
0472703ecbe23cd3e3ba617f7127b2cc *R/method-print.r
9e69d495a73b969502e3d879a57c1d01 *R/method-scale-color.R
bbcac968838e6cde37f8e23546bf618d *R/msaplot.R
00255c94a9facad694ac197971f2814e *R/multiplot.R
923c111c4079ee274fd30d1b3651427e *R/operator.R
57b6ecf554245c7ab5a5ea613984a27a *R/reexports.R
908d00124f23970a21635e2cea5bf7b7 *R/scales.R
e017cf3d7e71b20a39c4e2ec6a0a758c *R/theme.R
de0a9471d0c069101ebaf4477b923a62 *R/tidytree.R
91c708fb0d4245bd26c2f710d25daac5 *R/tree-utilities.R
dc77af9b91643eaf67fb764fa4592412 *R/treeio.R
beb04e7dd59a9d931f10b89d4a7e6341 *R/utilities.R
efbff295d1ecf88eb274e8d1735b3611 *R/zzz.R
494fcc2b48c9f9b1a68d2b6aeb191516 *README.md
b6bf4d7e5ecdc299ac1ff8b5d6a3d364 *build/vignette.rds
223e25c1903e24e6fa89b25e99be3ab1 *inst/CITATION
3eacad6dcbfc89d1433a16476ccd62a7 *inst/doc/ggtree.R
eba0d8f7841b7891fd75eadbf534b13a *inst/doc/ggtree.Rmd
d94aec814161717ce12996bdda35a7c4 *inst/doc/ggtree.html
50a3ca4bf4fb7cb3760a2da06b0092d5 *inst/examples/FluA_H3_AA.fas
45fbdc6dbbe09d7cb2a772b52f3586bb *inst/examples/Genotype.txt
3e4b2cb8b91161d34b93eba05ff86ad5 *inst/examples/MCC_FluA_H3.tree
dfc802b385f070ef1fc0b6e363019aab *inst/examples/NAG_inHA1.txt
95f7461c6f88d488710258f8a90e19c6 *inst/examples/ggdensitree_example.tree
74c13e85b2e1d8dd4d63544939ae0f1d *inst/examples/mlc
eb74b2c15ca83b6d3a2e09acd8da813f *inst/examples/rst
c1b2aa7c632a537ced5dd0e699fcef0b *inst/examples/sites.txt
ff1b47616f42335e2ec190c35962aab9 *man/Date2decimal.Rd
4726fd9672bbd5391b8f18ab269f1c1b *man/GeomHilightEncircle.Rd
0d72aae1bc844d6069b664bd08c6b301 *man/GeomInteractiveCurvelink.Rd
669f7eada765dc28d01c2eca8c22def7 *man/GeomInteractiveHilightEncircle.Rd
db5c9c6db1e3b2c21c01b7b59cda80a3 *man/GeomInteractiveHilightRect.Rd
b22713eb0a3f6782fdaf53425618c6a7 *man/GeomInteractiveLabelGGtree.Rd
9b07ffb2572f7af0fe9508c46f89a5a1 *man/GeomInteractivePointGGtree.Rd
0819a9ff3670c9e503389c1331d6e69a *man/GeomInteractiveSegmentGGtree.Rd
f0144038e7e16e9a8ff5665735f7c2a0 *man/GeomInteractiveTextGGtree.Rd
8a49e4541165df124cea89db481a17ff *man/add_TREEINFO.Rd
050e66c0911cc385eb273052600ae57d *man/add_colorbar.Rd
05adfd6b855e906bf570d79f10a049fb *man/applyLayoutDaylight.Rd
312f96fd99f24c0350e3bcd15f0d8163 *man/as.polytomy.Rd
753d43a9cfd91f62b9d9b148c500e2a0 *man/collapse.Rd
80b50b212365dddb3befc0628ab498de *man/decimal2Date.Rd
8d4ddb76983612d21eadabdbd89027b7 *man/expand.Rd
3e7451ccfb4f1d63a050dafdbdabf9fb *man/facet-plot.Rd
0305cbc6db320e80d4dc52ae1a8f0d84 *man/facet_data.Rd
6498b5182839489c1d1d82d9001fb9f0 *man/facet_labeller.Rd
5d6cb8d3272a148e3eb4ff275dc01601 *man/facet_widths.Rd
645d5fc1c3c61907fff77c98a7b1023f *man/flip.Rd
01d1bbfa7f5cbc9efe05aa6c7661f734 *man/geom-hilight.Rd
3f418eaad47fe6a52351b11b5cb30d06 *man/geom_aline.Rd
c36c248b497cac8582565bbbb682f574 *man/geom_balance.Rd
384a29c19fbb399e1a947f14f11fb01b *man/geom_cladelab.Rd
f0320c8ee51b7a7975416a67c5f4b5ac *man/geom_cladelabel.Rd
3c556a18fd50eaf53ff1e51b7dee3363 *man/geom_cladelabel2.Rd
2553078191e566ac2c0da4b0a278dbe1 *man/geom_label2.Rd
075fb43376e5e0e26de2ab2ae2654bed *man/geom_label2_interactive.Rd
2988c515a13c95e1cf8d08f5d98671a5 *man/geom_motif.Rd
4c4a3bbdbe912a27d791ed457ba1bca8 *man/geom_nodelab.Rd
f5efd77db462909009f8d33a9544cbc9 *man/geom_nodelab2.Rd
11f1181ce993446ebeacbf3f5cb51ab0 *man/geom_nodepoint.Rd
c296be0e6bc19a816550a856ce5e87bd *man/geom_point2.Rd
252affcd192964e0496ab5c24e91ea03 *man/geom_point2_interactive.Rd
49042ea3ee6ce320ac1294755edaa049 *man/geom_range.Rd
d287ef414d39db45d05aba52cf05cd21 *man/geom_rootedge.Rd
142e6b091630601d3b468288ffeae418 *man/geom_rootpoint.Rd
66dd3d381b9d5a61adbbefedab0c0ad5 *man/geom_segment2.Rd
7995c957c6e157a0b929317f05e4fa72 *man/geom_segment2_interactive.Rd
bb42338903ef7b55b6cc8451efac3391 *man/geom_strip.Rd
8010c2d419dbe2540fe2c73abf761112 *man/geom_striplab.Rd
81c218c78fd4e79fe21934a269d8acc3 *man/geom_taxalink.Rd
238a107525102c47712c27ceade9b2b1 *man/geom_text2.Rd
1f940f9129cd1e505aeca15738bea6f0 *man/geom_text2_interactive.Rd
6d261ebf2bbc1b17dc9d335617f682ab *man/geom_tiplab.Rd
1a7a04bcf49493b1dee9e4edf1c30389 *man/geom_tiplab2.Rd
8ee26ba41a80b6f928dfd054276eabb4 *man/geom_tippoint.Rd
b7693373c7d6891638b31dd4ce4cb184 *man/geom_tree.Rd
b7ca8a23822e7a50466466b393c70778 *man/geom_tree2.Rd
1809c7b2ecdff938cacfdac11bc8dc6a *man/geom_treescale.Rd
839c432da2fbe66e2272d68bbd0c7d2c *man/geom_zoom_clade.Rd
95e8c7112ddda0e74e88e03db2e91b73 *man/get.path.Rd
b9f4e6a4f768d96234c2ca7ef547ca65 *man/getNodeAngle.df.Rd
8176688d65530ac2e61dbdfd35f2b746 *man/getNodesBreadthFirst.df.Rd
118a2d6f0ff9024d7dae652579c9a3f8 *man/getSubtree.Rd
1295c2c9fc1a79f92f03b3a949f3042e *man/getSubtree.df.Rd
c2540f28ceccc532c6290e61db624853 *man/getSubtreeUnrooted.Rd
dd55c0ccac6f30a3a34f926847fd2c5b *man/getSubtreeUnrooted.df.Rd
8c09cc2998547c1a199695571e0f5953 *man/getTreeArcAngles.Rd
2244183f75481a778c242730d0f45ce6 *man/get_clade_position.Rd
009b2d26de0c8bf3259a74ad7d8fa185 *man/get_heatmap_column_position.Rd
3b7230ac287a35b01d4fd50353a1189b *man/get_taxa_name.Rd
fd187a2f67c14472016280d14f481cbd *man/ggdensitree.Rd
4b3aa604cf1898ee7dcebee7f0602f25 *man/ggexpand.Rd
ded2e85e1afa6c2fc2e60126807eed96 *man/ggtree-format-painter.Rd
cdf2041bc502d22e03250e2be279129f *man/ggtree-ggproto.Rd
762573cf84dac131d6e718782dffbd21 *man/ggtree-package.Rd
1f0a7217c3535695597c45646e1be6dc *man/ggtree.Rd
9646be4a00e4a98f8ad2ac98dcb5290f *man/ggtree_set_interactive.Rd
4923b17ae37266928bb270025697674d *man/ggtree_unset_interactive.Rd
03d5db4a42304090b6b5580995f29a99 *man/gheatmap.Rd
582253c0016706de6134596a0f715040 *man/gzoom-methods.Rd
931ead14669433a9542f6db582c6937a *man/gzoom.phylo.Rd
91d1c35021728a654fd396dce5064a1b *man/inset.Rd
3830e2a64d3b74f66b3ead79ab9d4387 *man/label_pad.Rd
39370215c531b0b5cd349cd6a830e014 *man/layoutDaylight.Rd
76387ac14b62a4d8aac3f7a337251a8e *man/layoutEqualAngle.Rd
40fea608197abd3ef7dc68927aac5143 *man/msaplot.Rd
bd6c6234081d07ad41194bc31b3d1362 *man/multiplot.Rd
aa0d81585d3aad0a2596b6b1fb539eb8 *man/nodebar.Rd
9b250128d57d79ecb81af79ab9440278 *man/nodepie.Rd
073902c1861ddce05492d1452c3d9c00 *man/open_tree.Rd
c532e0aa679af95db4718677cbcd2047 *man/range_format.Rd
a4202e81f81dc9473ec311020bfab2ab *man/reexports.Rd
c06cccc0f13169cee84f1ee07d6e2ec9 *man/revts.Rd
44f7ca1859be7c4fb1bb16a4c6a3db71 *man/rotate.Rd
b2669afbb254358c8c5173abb6115071 *man/rotateTreePoints.Rd
0efb0d061c5f0f40e56fd0311b696e8d *man/rotate_tree.Rd
5d4e5bd83828e052b7e4fdcea287219d *man/scale-color-subtree.Rd
b093220dd6ce650da1dfc46956dac2a5 *man/scaleClade.Rd
24d65253b9dca40d37b3ceee1bd85842 *man/scale_color-methods.Rd
141e90dce8b3dbd9dedc718f54fe53c2 *man/scale_x_ggtree.Rd
32e2e75f8e9b87406ad4d1e2cd07cc81 *man/scale_x_range.Rd
de2d87e39b3460395c46cfb887654c57 *man/set_hilight_legend.Rd
1c6725a430656f4082209e4b2eb786e2 *man/theme_dendrogram.Rd
ccfdfefb7e64be73b0b66b8c4ac24443 *man/theme_inset.Rd
d2aa21b2830e9caf26ea96d472aa0d88 *man/theme_tree.Rd
0fab336ff84876f79b7b9acbf5ddd0f5 *man/theme_tree2.Rd
53ddaf59c9cc1c2bc9bff49db0bfac06 *man/tree-layout.Rd
94f68b20a9548b8e5bba71f70be57bac *man/viewClade.Rd
53b3cf73ddc29e97ba15fb047559e014 *man/xlim_expand.Rd
c7ac7a2d4df1446dd4763d87be12ca83 *man/xlim_tree.Rd
726e1a3e52600509a9f61c9b14af777c *man/zoomClade.Rd
ba72d171e52b3de53af2c561b1209ef1 *tests/testthat.R
9e0a3524ec759e556add62d1401957bb *tests/testthat/test-conversion.R
2212a01c34b993e1b2c065c70cd04699 *tests/testthat/test-geom_balance.R
913d4c57b1254e48195f380e1f194e03 *tests/testthat/test-geom_cladelabel.R
c4526f67d7348ff18da01fe738ae621c *tests/testthat/test-geom_hilight.R
9df12e338aef68e906beb7f147b8b11a *tests/testthat/test-group.R
1bc026374021e69996b66fb7befab0b0 *tests/testthat/test-xlim_expand.R
eba0d8f7841b7891fd75eadbf534b13a *vignettes/ggtree.Rmd
