// Generated by using Rcpp::compileAttributes() -> do not edit by hand
// Generator token: 10BE3573-1514-4C36-9D1C-5A225CD40393

#include <Rcpp.h>

using namespace Rcpp;

#ifdef RCPP_USE_GLOBAL_ROSTREAM
Rcpp::Rostream<true>&  Rcpp::Rcout = Rcpp::Rcpp_cout_get();
Rcpp::Rostream<false>& Rcpp::Rcerr = Rcpp::Rcpp_cerr_get();
#endif

// scoreSequence
Rcpp::DataFrame scoreSequence(Rcpp::NumericMatrix sem, Rcpp::CharacterVector dna_sequences, int nFlank, float bl, Rcpp::CharacterVector seqIds);
RcppExport SEXP _SEMPLR_scoreSequence(SEXP semSEXP, SEXP dna_sequencesSEXP, SEXP nFlankSEXP, SEXP blSEXP, SEXP seqIdsSEXP) {
BEGIN_RCPP
    Rcpp::RObject rcpp_result_gen;
    Rcpp::RNGScope rcpp_rngScope_gen;
    Rcpp::traits::input_parameter< Rcpp::NumericMatrix >::type sem(semSEXP);
    Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type dna_sequences(dna_sequencesSEXP);
    Rcpp::traits::input_parameter< int >::type nFlank(nFlankSEXP);
    Rcpp::traits::input_parameter< float >::type bl(blSEXP);
    Rcpp::traits::input_parameter< Rcpp::CharacterVector >::type seqIds(seqIdsSEXP);
    rcpp_result_gen = Rcpp::wrap(scoreSequence(sem, dna_sequences, nFlank, bl, seqIds));
    return rcpp_result_gen;
END_RCPP
}

static const R_CallMethodDef CallEntries[] = {
    {"_SEMPLR_scoreSequence", (DL_FUNC) &_SEMPLR_scoreSequence, 5},
    {NULL, NULL, 0}
};

RcppExport void R_init_SEMPLR(DllInfo *dll) {
    R_registerRoutines(dll, NULL, CallEntries, NULL, NULL);
    R_useDynamicSymbols(dll, FALSE);
}
