onlineFDR
This is the released version of onlineFDR; for the devel version, see onlineFDR.
Online error rate control
Bioconductor version: Release (3.23)
This package allows users to control the false discovery rate (FDR) or familywise error rate (FWER) for online multiple hypothesis testing, where hypotheses arrive in a stream. In this framework, a null hypothesis is rejected based on the evidence against it and on the previous rejection decisions.
Author: David S. Robertson [aut, cre], Lathan Liou [aut], Aaditya Ramdas [aut], Adel Javanmard [ctb], Andrea Montanari [ctb], Jinjin Tian [ctb], Tijana Zrnic [ctb], Natasha A. Karp [aut]
Maintainer: David S. Robertson <david.robertson at mrc-bsu.cam.ac.uk>
citation("onlineFDR")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("onlineFDR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("onlineFDR")| Advanced usage of onlineFDR | HTML | R Script |
| The theory behind onlineFDR | HTML | R Script |
| Using the onlineFDR package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | MultipleComparison, Software, StatisticalMethod |
| Version | 2.20.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (8 years) |
| License | GPL-3 |
| Depends | |
| Imports | stats, Rcpp, progress |
| System Requirements | |
| URL | https://dsrobertson.github.io/onlineFDR/index.html |
See More
| Suggests | knitr, rmarkdown, testthat, covr |
| Linking To | Rcpp, RcppProgress |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | onlineFDR_2.20.0.tar.gz |
| Windows Binary (x86_64) | onlineFDR_2.20.0.zip |
| macOS Binary (big-sur-x86_64) | onlineFDR_2.20.0.tgz |
| macOS Binary (sonoma-arm64) | onlineFDR_2.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/onlineFDR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/onlineFDR |
| Bioc Package Browser | https://code.bioconductor.org/browse/onlineFDR/ |
| Package Short Url | https://bioconductor.org/packages/onlineFDR/ |
| Package Downloads Report | Download Stats |