antiProfiles
This is the released version of antiProfiles; for the devel version, see antiProfiles.
Implementation of gene expression anti-profiles
Bioconductor version: Release (3.23)
Implements gene expression anti-profiles as described in Corrada Bravo et al., BMC Bioinformatics 2012, 13:272 doi:10.1186/1471-2105-13-272.
Author: Hector Corrada Bravo, Rafael A. Irizarry and Jeffrey T. Leek
Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>
citation("antiProfiles")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("antiProfiles")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("antiProfiles")| Introduction to antiProfiles | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Classification, GeneExpression, Software |
| Version | 1.52.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (13.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.0), matrixStats (>= 0.50.0), methods (>= 2.14), locfit (>= 1.5) |
| Imports | |
| System Requirements | |
| URL | https://github.com/HCBravoLab/antiProfiles |
See More
| Suggests | antiProfilesData, RColorBrewer |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | antiProfiles_1.52.0.tar.gz |
| Windows Binary (x86_64) | antiProfiles_1.52.0.zip |
| macOS Binary (big-sur-x86_64) | antiProfiles_1.52.0.tgz |
| macOS Binary (sonoma-arm64) | antiProfiles_1.52.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/antiProfiles |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/antiProfiles |
| Bioc Package Browser | https://code.bioconductor.org/browse/antiProfiles/ |
| Package Short Url | https://bioconductor.org/packages/antiProfiles/ |
| Package Downloads Report | Download Stats |