KEGGREST
This is the released version of KEGGREST; for the devel version, see KEGGREST.
Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)
Bioconductor version: Release (3.23)
A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. Only for academic use by academic users belonging to academic institutions (see
Author: Dan Tenenbaum [aut], Bioconductor Package Maintainer [aut, cre], Martin Morgan [ctb], Kozo Nishida [ctb], Marcel Ramos [ctb], Kristina Riemer [ctb], Lori Shepherd [ctb], Jeremy Volkening [ctb]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("KEGGREST")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("KEGGREST")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("KEGGREST")| Accessing the KEGG REST API | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, KEGG, Pathways, Software, ThirdPartyClient |
| Version | 1.52.2 |
| In Bioconductor since | BioC 2.12 (R-3.0) (13.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0) |
| Imports | methods, httr, png, Biostrings |
| System Requirements | |
| URL | https://bioconductor.org/packages/KEGGREST |
| Bug Reports | https://github.com/Bioconductor/KEGGREST/issues |
See More
| Suggests | RUnit, BiocGenerics, BiocStyle, knitr, markdown |
| Linking To | |
| Enhances | |
| Depends On Me | ROntoTools |
| Imports Me | ADAM, adSplit, AnnotationDbi, attract, BiocSet, ChIPpeakAnno, CNEr, EnrichmentBrowser, famat, FELLA, funOmics, gage, ginmappeR, MetaboDynamics, MetaboSignal, MWASTools, PADOG, pairkat, pathview, SBGNview, SMITE, terapadog, transomics2cytoscape, YAPSA, WayFindR |
| Suggests Me | anansi, Category, categoryCompare, dmGsea, gatom, GenomicRanges, globaltest, iSEEu, MetMashR, MLP, padma, rGREAT, RTopper, SomaScan.db, Hiiragi2013, CALANGO, ggpicrust2, maGUI, phoenics, ReporterScore, scDiffCom, specmine, ume |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | KEGGREST_1.52.2.tar.gz |
| Windows Binary (x86_64) | KEGGREST_1.51.1.zip |
| macOS Binary (big-sur-x86_64) | KEGGREST_1.52.2.tgz |
| macOS Binary (sonoma-arm64) | KEGGREST_1.52.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/KEGGREST |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/KEGGREST |
| Bioc Package Browser | https://code.bioconductor.org/browse/KEGGREST/ |
| Package Short Url | https://bioconductor.org/packages/KEGGREST/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.23 | Source Archive |