GEWIST
This is the released version of GEWIST; for the devel version, see GEWIST.
Gene Environment Wide Interaction Search Threshold
Bioconductor version: Release (3.23)
This 'GEWIST' package provides statistical tools to efficiently optimize SNP prioritization for gene-gene and gene-environment interactions.
Author: Wei Q. Deng, Guillaume Pare
Maintainer: Wei Q. Deng <dengwq at mcmaster.ca>
citation("GEWIST")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GEWIST")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GEWIST")| GEWIST.pdf | R Script | |
| Reference Manual |
Details
| biocViews | Genetics, MultipleComparison, Software |
| Version | 1.56.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (14.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.10), car |
| Imports | |
| System Requirements | |
| URL |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GEWIST_1.56.0.tar.gz |
| Windows Binary (x86_64) | GEWIST_1.56.0.zip |
| macOS Binary (big-sur-x86_64) | GEWIST_1.56.0.tgz |
| macOS Binary (sonoma-arm64) | GEWIST_1.56.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GEWIST |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GEWIST |
| Bioc Package Browser | https://code.bioconductor.org/browse/GEWIST/ |
| Package Short Url | https://bioconductor.org/packages/GEWIST/ |
| Package Downloads Report | Download Stats |