BRAIN
This is the released version of BRAIN; for the devel version, see BRAIN.
Baffling Recursive Algorithm for Isotope distributioN calculations
Bioconductor version: Release (3.23)
Package for calculating aggregated isotopic distribution and exact center-masses for chemical substances (in this version composed of C, H, N, O and S). This is an implementation of the BRAIN algorithm described in the paper by J. Claesen, P. Dittwald, T. Burzykowski and D. Valkenborg.
Author: Piotr Dittwald, with contributions of Dirk Valkenborg and Jurgen Claesen
Maintainer: Piotr Dittwald <piotr.dittwald at mimuw.edu.pl>
citation("BRAIN")):
Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M (2015). "Orchestrating high-throughput genomic analysis with Bioconductor." Nature Methods, 12(2), 115–121. doi:10.1038/nmeth.3252.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JYH, Zhang J (2004). "Bioconductor: open software development for computational biology and bioinformatics." Genome Biology, 5(10), R80. doi:10.1186/gb-2004-5-10-r80.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BRAIN")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BRAIN")| BRAIN Usage | R Script | |
| Reference Manual |
Details
| biocViews | ImmunoOncology, MassSpectrometry, Proteomics, Software |
| Version | 1.58.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (14.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.8.1), PolynomF, Biostrings, lattice |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | cleaver, RforProteomics |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BRAIN_1.58.0.tar.gz |
| Windows Binary (x86_64) | BRAIN_1.58.0.zip |
| macOS Binary (big-sur-x86_64) | BRAIN_1.58.0.tgz |
| macOS Binary (sonoma-arm64) | BRAIN_1.58.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/BRAIN |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BRAIN |
| Bioc Package Browser | https://code.bioconductor.org/browse/BRAIN/ |
| Package Short Url | https://bioconductor.org/packages/BRAIN/ |
| Package Downloads Report | Download Stats |