# Cytometry Cluster Hierarchy and Cellular-to-phenotype Associations

## Documentation for package ‘treekoR’ version 1.19.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

addFreqBars | Title
addHeatMap | Title
addTree | Title
colourTree | colourTree
DeBiasi_COVID_CD8_samp | COVID-19 Sample data
findChildren | findChildren
geometricMean | geometricMean
getCellGMeans | getCellGMeans
getCellProp | getCellProp
getClusterTree | getClusterTree This function takes a CATALYST sce with clusters and creates a hierarchical tree
getParentProp | getParentProp
getTotalProp | getTotalProp
getTreeResults | getTreeResults
hopachToPhylo | hopachToPhylo
plotInteractiveHeatmap | Title
plotSigScatter | plotSigScatter
runEdgeRTests | runEdgeRTests
runGLMMTests | runGLMMTests
runHOPACH | runHOPACH
testTree | testTree