plyranges-package	plyranges-package
%>%	pipe
%intersect%	element-setops
%setdiff%	element-setops
%union%	element-setops
add_nearest_distance	add-nearest-distance
add_nearest_distance_downstream	add-nearest-distance
add_nearest_distance_left	add-nearest-distance
add_nearest_distance_right	add-nearest-distance
add_nearest_distance_upstream	add-nearest-distance
anchor	ranges-anchor
anchor_3p	ranges-anchor
anchor_5p	ranges-anchor
anchor_center	ranges-anchor
anchor_centre	ranges-anchor
anchor_end	ranges-anchor
anchor_start	ranges-anchor
arrange.Ranges	ranges-arrange
as_granges	ranges-construct
as_iranges	ranges-construct
as_ranges	as_ranges
BamFileOperator-class	ranges-class
between	element-setops
bind_ranges	ranges-bind
chop_by_gaps	ranges-chop
chop_by_introns	ranges-chop
complement_ranges	ranges-setops
complement_ranges_directed	ranges-setops
compute_coverage	compute_coverage
count_overlaps	ranges-count-overlaps
count_overlaps.GenomicRanges	ranges-count-overlaps
count_overlaps.IntegerRanges	ranges-count-overlaps
count_overlaps_directed	ranges-count-overlaps
count_overlaps_directed.GenomicRanges	ranges-count-overlaps
count_overlaps_within	ranges-count-overlaps
count_overlaps_within.GenomicRanges	ranges-count-overlaps
count_overlaps_within.IntegerRanges	ranges-count-overlaps
count_overlaps_within_directed	ranges-count-overlaps
count_overlaps_within_directed.GenomicRanges	ranges-count-overlaps
DeferredGenomicRanges-class	ranges-deferred
disjoin_ranges	ranges-disjoin
disjoin_ranges_directed	ranges-disjoin
expand_ranges	ranges-expand
FileOperator-class	ranges-class
filter-ranges	filter-ranges
filter.Ranges	filter-ranges
filter_by_non_overlaps	ranges-filter-overlaps
filter_by_non_overlaps_directed	ranges-filter-overlaps
filter_by_overlaps	ranges-filter-overlaps
filter_by_overlaps_directed	ranges-filter-overlaps
find_overlaps	ranges-overlaps
find_overlaps.GenomicRanges	ranges-overlaps
find_overlaps.IntegerRanges	ranges-overlaps
find_overlaps_directed	ranges-overlaps
find_overlaps_directed.GenomicRanges	ranges-overlaps
find_overlaps_within	ranges-overlaps
find_overlaps_within.GenomicRanges	ranges-overlaps
find_overlaps_within.IntegerRanges	ranges-overlaps
find_overlaps_within_directed	ranges-overlaps
find_overlaps_within_directed.GenomicRanges	ranges-overlaps
flank_downstream	ranges-flank
flank_left	ranges-flank
flank_right	ranges-flank
flank_upstream	ranges-flank
genome_info	ranges-info
get_genome_info	ranges-info
GroupedGenomicRanges-class	group_by-ranges
GroupedIntegerRanges-class	group_by-ranges
groups.GroupedGenomicRanges	group_by-ranges
groups.GroupedIntegerRanges	group_by-ranges
group_by-ranges	group_by-ranges
group_by.GenomicRanges	group_by-ranges
group_by_overlaps	ranges-overlaps
group_by_overlaps.GenomicRanges	ranges-overlaps
group_by_overlaps.IntegerRanges	ranges-overlaps
id_to_column	ranges-names
intersect_ranges	ranges-setops
intersect_ranges_directed	ranges-setops
interweave	ranges-interweave
join_follow	ranges-follow
join_follow_left	ranges-follow
join_follow_upstream	ranges-follow
join_mcols_inner	mcols-joins
join_mcols_left	mcols-joins
join_nearest	ranges-nearest
join_nearest_downstream	ranges-nearest
join_nearest_left	ranges-nearest
join_nearest_right	ranges-nearest
join_nearest_upstream	ranges-nearest
join_overlap_inner	overlap-joins
join_overlap_inner_directed	overlap-joins
join_overlap_inner_within	overlap-joins
join_overlap_inner_within_directed	overlap-joins
join_overlap_intersect	overlap-joins
join_overlap_intersect_directed	overlap-joins
join_overlap_intersect_within	overlap-joins
join_overlap_intersect_within_directed	overlap-joins
join_overlap_left	overlap-joins
join_overlap_left_directed	overlap-joins
join_overlap_left_within	overlap-joins
join_overlap_left_within_directed	overlap-joins
join_overlap_self	ranges-overlaps-self
join_overlap_self_directed	ranges-overlaps-self
join_overlap_self_within	ranges-overlaps-self
join_overlap_self_within_directed	ranges-overlaps-self
join_precede	ranges-precede
join_precede_downstream	ranges-precede
join_precede_right	ranges-precede
mutate.Ranges	mutate-ranges
n	n
names_to_column	ranges-names
n_distinct	n_distinct
overscope_ranges	overscope_ranges
pair_follow	ranges-pairs
pair_nearest	ranges-pairs
pair_overlaps	ranges-pairs
pair_precede	ranges-pairs
plyranges	plyranges-package
pull-ranges	pull-ranges
pull.Ranges	pull-ranges
ranges-info	ranges-info
read_bam	io-bam-read
read_bed	io-bed-read
read_bed_graph	io-bed-read
read_bigwig	io-bigwig-read
read_gff	io-gff-read
read_gff1	io-gff-read
read_gff2	io-gff-read
read_gff3	io-gff-read
read_narrowpeaks	io-bed-read
read_wig	io-wig-read
reduce_ranges	ranges-reduce
reduce_ranges_directed	ranges-reduce
remove_names	ranges-names
select.Ranges	ranges-select
setdiff_ranges	ranges-setops
setdiff_ranges_directed	ranges-setops
set_end	ranges-setters
set_genome_info	ranges-info
set_seqnames	ranges-setters
set_start	ranges-setters
set_strand	ranges-setters
set_width	ranges-setters
shift_downstream	ranges-shift
shift_left	ranges-shift
shift_right	ranges-shift
shift_upstream	ranges-shift
slice.GroupedGenomicRanges	slice-ranges
slice.GroupedIntegerRanges	slice-ranges
slice.Ranges	slice-ranges
slice_head.GroupedGenomicRanges	slice-ranges
slice_head.GroupedIntegerRanges	slice-ranges
slice_head.Ranges	slice-ranges
slice_max.GroupedGenomicRanges	slice-ranges
slice_max.GroupedIntegerRanges	slice-ranges
slice_max.Ranges	slice-ranges
slice_min.GroupedGenomicRanges	slice-ranges
slice_min.GroupedIntegerRanges	slice-ranges
slice_min.Ranges	slice-ranges
slice_sample.GroupedGenomicRanges	slice-ranges
slice_sample.GroupedIntegerRanges	slice-ranges
slice_sample.Ranges	slice-ranges
slice_tail.GroupedGenomicRanges	slice-ranges
slice_tail.GroupedIntegerRanges	slice-ranges
slice_tail.Ranges	slice-ranges
slide_ranges	ranges-tile
span	element-setops
stretch	stretch
summarise.Ranges	ranges-summarise
tile_ranges	ranges-tile
unanchor	ranges-anchor
ungroup.GroupedGenomicRanges	group_by-ranges
union_ranges	ranges-setops
union_ranges_directed	ranges-setops
write_bed	io-bed-write
write_bed_graph	io-bed-write
write_bigwig	io-bigwig-write
write_gff	io-gff-write
write_gff1	io-gff-write
write_gff2	io-gff-write
write_gff3	io-gff-write
write_narrowpeaks	io-bed-write
write_wig	io-wig-write
