%union%                 Row-wise set operations on Ranges objects
DeferredGenomicRanges-class
                        DeferredGenomiRanges objects
FileOperator-class      An abstract class to represent operations
                        performed over a file
GroupedGenomicRanges-class
                        Group a Ranges by one or more variables
add_nearest_distance    Add distance to nearest neighbours between two
                        Ranges objects
anchor                  Anchored Ranges objects
arrange.Ranges          Sort a Ranges object
as_iranges              Construct a I/GRanges object from a tibble or
                        data.frame
as_ranges               Coerce an Rle or RleList object to Ranges
bind_ranges             Combine Ranges by concatentating them together
chop_by_introns         Group a GRanges object by introns or gaps
compute_coverage        Compute coverage over a Ranges object
count_overlaps          Count the number of overlaps between two Ranges
                        objects
disjoin_ranges          Disjoin then aggregate a Ranges object
expand_ranges           Expand list-columns in a Ranges object
filter-ranges           Subset a 'Ranges' object
filter_by_overlaps      Filter by overlapping/non-overlapping ranges
find_overlaps           Find overlap between two Ranges
flank_left              Generate flanking regions
intersect_ranges        Vector-wise Range set-operations
interweave              Interweave a pair of Ranges objects together
join_follow             Find following Ranges
join_mcols_inner        Join data by metadata columns
join_nearest            Find nearest neighbours between two Ranges
                        objects
join_overlap_intersect
                        Join by overlapping Ranges
join_overlap_self       Find overlaps within a Ranges object
join_precede            Find preceding Ranges
mutate.Ranges           Modify a Ranges object
n                       Compute the number of ranges in each group.
n_distinct              Compute the number of distinct unique values in
                        a vector or List
overscope_ranges        Create an overscoped environment from a Ranges
                        object
pair_overlaps           Pair together two ranges objects
plyranges-package       plyranges: a grammar of genomic data
                        manipulation
pull-ranges             Extract a single column from a Ranges object as
                        a vector
ranges-info             Construct annotation information
read_bam                Read a BAM file
read_bed                Read a BED or BEDGraph file
read_bigwig             Read a BigWig file
read_gff                Read a GFF/GTF/GVT file
read_wig                Read a WIG file
reduce_ranges           Reduce then aggregate a Ranges object
remove_names            Tools for working with named Ranges
select.Ranges           Select metadata columns of the Ranges object by
                        name or position
set_width               Functional setters for Ranges objects
shift_left              Shift all coordinates in a genomic interval
                        left or right, upstream or downstream
slice.Ranges            Choose ranges by their position
stretch                 Stretch a genomic interval
summarise.Ranges        Reduce multiple values in a Ranges down to a
                        single value
tile_ranges             Slide or tile over a Ranges object
write_bed               Write a BED or BEDGraph file
write_bigwig            Write a BigWig file
write_gff               Write a GFF(123) file
write_wig               Write a WIG file
