Package: mbQTL
Type: Package
Title: mbQTL: A package for SNP-Taxa mGWAS analysis
Version: 1.11.0
Authors@R: 
    c(person(given = "Mercedeh",
           family = "Movassagh",
           role = c("aut", "cre"),
           email = "mercedeh.movassagh@yale.edu",
           comment = c(ORCID = "0000-0001-7690-0230")),
           person("Steven","Schiff", role="aut"),
           person("Joseph N", "Paulson", role="aut"))
Description: mbQTL is a statistical R package for simultaneous
        16srRNA,16srDNA (microbial) and variant, SNP, SNV (host)
        relationship, correlation, regression studies. We apply linear,
        logistic and correlation based statistics to identify the
        relationships of taxa, genus, species and variant, SNP, SNV in
        the infected host. We produce various statistical significance
        measures such as P values, FDR, BC and probability estimation
        to show significance of these relationships. Further we provide
        various visualization function for ease and clarification of
        the results of these analysis. The package is compatible with
        dataframe, MRexperiment and text formats.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.3.0)
DeploySubPath: mbQTL
biocViews: SNP, Microbiome, WholeGenome, Metagenomics,
        StatisticalMethod, Regression
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.1
Imports: MatrixEQTL, dplyr, ggplot2, readxl, stringr, tidyr,
        metagenomeSeq, pheatmap, broom, graphics, stats, methods
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
URL: "https://github.com/Mercedeh66/mbQTL"
BugReport: "https://github.com/Mercedeh66/mbQTL/issues"
Config/pak/sysreqs: libicu-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:20:58 UTC
RemoteUrl: https://github.com/bioc/mbQTL
RemoteRef: HEAD
RemoteSha: 22bccdcfe5886abb70948ca634f16f9428191158
NeedsCompilation: no
Packaged: 2026-03-10 08:47:56 UTC; root
Author: Mercedeh Movassagh [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7690-0230>),
  Steven Schiff [aut],
  Joseph N Paulson [aut]
Maintainer: Mercedeh Movassagh <mercedeh.movassagh@yale.edu>
Built: R 4.6.0; ; 2026-03-10 08:49:17 UTC; windows
