# scRNAseq demultiplexing using cell hashing and SNPs

## Documentation for package ‘demuxSNP’ version 1.9.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

add_snps | Add SNPs to SingleCellExperiment object
commonvariants_1kgenomes_subset | Sample vcf file
common_genes | Return a character vector of top n most frequent genes from a SingleCellExperiment object.
high_conf_calls | Run demuxmix to determine high-confidence calls
multiplexed_scrnaseq_sce | SingleCellExperiment object containing multiplexed RNA and HTO data from six biological smamples
reassign | Reassign cells using knn
reassign_balanced | Reassign cells using balanced knn with jaccard distance
reassign_centroid | Reassign cells based on SNPs
reassign_jaccard | Reassign cells using knn with jaccard distance
subset_vcf | Subset common variants vcf file to only SNPs seen in 'top_genes'
vartrix_consensus_snps | Sample VarTrix output