Package: ddPCRclust
Title: Clustering algorithm for ddPCR data
Version: 1.31.0
Authors@R: c(person("Benedikt G.", "Brink", email = "bbrink@cebitec.uni-bielefeld.de", role = c("aut", "cre")), 
          person("Justin", "Meskas", email = "jmeskas@bccrc.ca", role = "ctb"), 
          person("Ryan R.", "Brinkman", email = "rbrinkman@bccrc.ca", role = "ctb"))
Description: The ddPCRclust algorithm can automatically quantify the
        CPDs of non-orthogonal ddPCR reactions with up to four targets.
        In order to determine the correct droplet count for each
        target, it is crucial to both identify all clusters and label
        them correctly based on their position. For more information on
        what data can be analyzed and how a template needs to be
        formatted, please check the vignette.
Depends: R (>= 3.5)
Imports: plotrix, clue, parallel, ggplot2, openxlsx, R.utils, flowCore,
        flowDensity (>= 1.13.3), SamSPECTRAL, flowPeaks
Suggests: BiocStyle
Collate: 'cluster_functions.R' 'functions.R' 'ddPCRclust.R'
License: Artistic-2.0
URL: https://github.com/bgbrink/ddPCRclust
BugReports: https://github.com/bgbrink/ddPCRclust/issues
biocViews: ddPCR, Clustering
RoxygenNote: 6.0.1
Config/pak/sysreqs: cmake make libgsl0-dev libicu-dev libjpeg-dev
        libpng-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:43:29 UTC
RemoteUrl: https://github.com/bioc/ddPCRclust
RemoteRef: HEAD
RemoteSha: 3ada4f8973764660ef3f5822ef9faffb23f2181b
NeedsCompilation: no
Packaged: 2026-04-02 23:07:51 UTC; root
Author: Benedikt G. Brink [aut, cre],
  Justin Meskas [ctb],
  Ryan R. Brinkman [ctb]
Maintainer: Benedikt G. Brink <bbrink@cebitec.uni-bielefeld.de>
Built: R 4.6.0; ; 2026-04-02 23:10:21 UTC; windows
