# Differential pattern analysis for Ribo-seq data

## Documentation for package ‘RiboDiPA’ version 1.19.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

binTrack | Visualization: generating tracks for 'igvR' (per bin)
bpTrack | Visualization: generating tracks for 'igvR' (per bp)
data.binned | An example of binned P-sites data
data.psite | An example of P-site coverage data
dataBinning | Data binning
diffPatternTest | Differential pattern analysis of Ribo-seq data
diffPatternTestExon | Main function for differential pattern analysis of exon-binned Ribo-seq data
exonTrack | Visualization: generating tracks for 'igvR' (per exon)
normFactor | Size factors for normalization by sequencing depth
plotTest | Plotting ribosome footprint data from mapped P-sites at the bin level.
plotTrack | Plotting ribosome footprint data at the mapped P-site level
psiteCal | P-site position of reads
psiteMapping | P-site mapping
result.exon | An example of exon-level differential pattern analysis result
result.pst | An example of differential pattern analysis result
RiboDiPA | A wrapper function for the RiboDiPA pipeline