Package: Rfastp
Type: Package
Title: An Ultra-Fast and All-in-One Fastq Preprocessor (Quality
        Control, Adapter, low quality and polyX trimming) and UMI
        Sequence Parsing).
Version: 1.21.3
Authors@R: c(
  person("Wei", "Wang",
    email="periwinkle.david@gmail.com", 
    role=c("cre", "aut"),
    comment = c(ORCID = "0000-0002-3216-7118")), 
  person("Ji-Dung", "Luo", 
    email="jluo@rockefeller.edu", 
    role=c("ctb"),
    comment = c(ORCID = "0000-0003-0150-1440")),
  person("Thomas", "Carroll", 
    email="tc.infomatics@gmail.com", 
    role = c("aut"),
    comment = c(ORCID = "0000-0002-0073-1714")))
Description: Rfastp is an R wrapper of fastp developed in c++. fastp
        performs quality control for fastq files. including low quality
        bases trimming, polyX trimming, adapter auto-detection and
        trimming, paired-end reads merging, UMI sequence/id handling.
        Rfastp can concatenate multiple files into one file (like shell
        command cat) and accept multiple files as input.
License: GPL-3 + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.1.1
biocViews: QualityControl, Sequencing, Preprocessing, Software
SystemRequirements: GNU make
LinkingTo: Rcpp, Rhtslib
Imports: Rcpp, rjson, ggplot2, reshape2
Suggests: BiocStyle, testthat, knitr, rmarkdown
VignetteBuilder: knitr
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev xz-utils
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-02-11 19:49:19 UTC
RemoteUrl: https://github.com/bioc/Rfastp
RemoteRef: HEAD
RemoteSha: 8883e2af24aeee686e3c3084d5227bb716a6fd7e
NeedsCompilation: yes
Packaged: 2026-03-16 08:02:23 UTC; root
Author: Wei Wang [cre, aut] (ORCID: <https://orcid.org/0000-0002-3216-7118>),
  Ji-Dung Luo [ctb] (ORCID: <https://orcid.org/0000-0003-0150-1440>),
  Thomas Carroll [aut] (ORCID: <https://orcid.org/0000-0002-0073-1714>)
Maintainer: Wei Wang <periwinkle.david@gmail.com>
Built: R 4.6.0; x86_64-w64-mingw32; 2026-03-16 08:04:20 UTC; windows
Archs: x64
