Package: RCM
Type: Package
Title: Fit row-column association models with the negative binomial
        distribution for the microbiome
Version: 1.27.0
Authors@R: 
    c(person(given = "Stijn", family = "Hawinkel", 
    email = "stijn.hawinkel@psb.ugent.be", 
    role=c("cre", "aut"), comment = c(ORCID = "0000-0002-4501-5180")))
Description: Combine ideas of log-linear analysis of contingency table,
        flexible response function estimation and empirical Bayes
        dispersion estimation for explorative visualization of
        microbiome datasets. The package includes unconstrained as well
        as constrained analysis. In addition, diagnostic plot to detect
        lack of fit are available.
License: GPL-2
Encoding: UTF-8
RoxygenNote: 7.3.3
Imports: RColorBrewer, alabama, edgeR, reshape2, tseries, stats, VGAM,
        ggplot2 (>= 2.2.1.9000), nleqslv, phyloseq, tensor, MASS,
        grDevices, graphics, methods
Depends: R (>= 4.4.0)
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: Metagenomics, DimensionReduction, Microbiome, Visualization
BugReports: https://github.com/CenterForStatistics-UGent/RCM/issues
URL:
        https://bioconductor.org/packages/release/bioc/vignettes/RCM/inst/doc/RCMvignette.html/
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:49:27 UTC
RemoteUrl: https://github.com/bioc/RCM
RemoteRef: HEAD
RemoteSha: 3b6b6a89dcd9951a3c0bef3f5bc37d6ce3993157
NeedsCompilation: no
Packaged: 2026-02-28 08:10:58 UTC; root
Author: Stijn Hawinkel [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-4501-5180>)
Maintainer: Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>
Built: R 4.6.0; ; 2026-02-28 08:12:32 UTC; windows
