Package: CRImage
Type: Package
Title: CRImage a package to classify cells and calculate tumour
        cellularity
Version: 1.59.0
Date: 2012-10-01
Author: Henrik Failmezger <failmezger@mpipz.mpg.de>, Yinyin Yuan
        <Yinyin.Yuan@cancer.org.uk>, Oscar Rueda
        <oscar.rueda@cancer.org.uk>, Florian Markowetz
        <Florian.Markowetz@cancer.org.uk>
Maintainer: Henrik Failmezger <failmezger@mpipz.mpg.de>, Yinyin Yuan
 <Yinyin.Yuan@cancer.org.uk>
Description: CRImage provides functionality to process and analyze
        images, in particular to classify cells in biological images.
        Furthermore, in the context of tumor images, it provides
        functionality to calculate tumour cellularity.
License: Artistic-2.0
LazyLoad: yes
Imports: MASS, e1071, foreach, sgeostat
Depends: EBImage, DNAcopy, aCGH
Collate: plotCorrectedCN.R correctCopyNumber.R writeDensityImage.R
        convertRGBToHSV.R convertHSVToRGB.R imageCompression.R
        createBinaryImage.R colorCorrection.R searchStructures.R
        segmentStructures.R classifyStructures.R numberOfNeighbors.R
        segmentCytoplasma.R segmentImage.R createClassifier.R
        kernelSmoother.R paintCells.R classifyCells.R
        determineCellularity.R calculateCellularity.R findSlices.R
        parseFinalScan.R classificationAperio.R processAperio.R
        Phansalkar_threshold.R SauvolaThreshold.R
        calculateMeanStdTarget.R convertLABToRGB.R convertRGBToLAB.R
        localORThreshold.R oregonThreshold.R localThreshold.R
        calculateOtsu.R classifyPen.R getImageDistance.R hist3d.R
        labelCells.R plotImage.R
biocViews: CellBiology, Classification
Packaged: 2026-03-02 07:37:21 UTC; root
Config/pak/sysreqs: libfftw3-dev make libjpeg-dev libpng-dev
        libtiff-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:05:56 UTC
RemoteUrl: https://github.com/bioc/CRImage
RemoteRef: HEAD
RemoteSha: 850c6ef01a8710c9a0b6b3b0a4758f04748d693b
NeedsCompilation: no
Built: R 4.6.0; ; 2026-03-02 07:38:40 UTC; windows
