Package: CNVrd2
Type: Package
Title: CNVrd2: a read depth-based method to detect and genotype complex
        common copy number variants from next generation sequencing
        data.
Version: 1.49.0
Date: 2014-10-04
Author: Hoang Tan Nguyen, Tony R Merriman and Mik Black
Depends: R (>= 3.0.0), methods, VariantAnnotation, parallel, rjags,
        ggplot2, gridExtra
VignetteBuilder: knitr
Suggests: knitr
Maintainer: Hoang Tan Nguyen <hoangtannguyenvn@gmail.com>
Description: CNVrd2 uses next-generation sequencing data to measure
        human gene copy number for multiple samples, indentify SNPs
        tagging copy number variants and detect copy number polymorphic
        genomic regions.
License: GPL-2
Imports: DNAcopy, IRanges, Rsamtools
biocViews: CopyNumberVariation, SNP, Sequencing, Software, Coverage,
        LinkageDisequilibrium, Clustering.
Collate: AllClasses.R AllGenerics.R countReadInWindow.R
        segmentSamples.R segmentSamplesUsingPopInformation.R
        identifyPolymorphicRegion.R plotPolymorphicRegion.R
        emnormalCNV.R groupCNVs.R searchGroupCNVs.R groupBayesianCNVs.R
        plotCNVrd2.R calculateLDSNPandCNV.R
URL: https://github.com/hoangtn/CNVrd2
Packaged: 2026-03-10 08:04:35 UTC; root
Config/pak/sysreqs: make jags libbz2-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:17:16 UTC
RemoteUrl: https://github.com/bioc/CNVrd2
RemoteRef: HEAD
RemoteSha: 1ed26d8cd424e623ade1dee1e60f5484d7ff9f2e
NeedsCompilation: no
Built: R 4.6.0; ; 2026-03-10 08:06:57 UTC; windows
