# Enable downstream analysis of Visium capture areas stitched together with Fiji

## Documentation for package ‘visiumStitched’ version 1.4.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

add_array_coords | Add transformed array and pixel coordinates to a 'SpatialExperiment'
add_overlap_info | Add info about how spots overlap among capture areas
as.Seurat | Convert a 'SpatialExperiment' object to a 'Seurat' object
build_SpatialExperiment | Build stitched 'SpatialExperiment'
merge_overlapping | Merge overlapping spots
prep_fiji | Prepare Fiji outputs for building a SpatialExperiment
prep_fiji_coords | Prepare Fiji outputs for building a SpatialExperiment
prep_fiji_image | Prepare Fiji outputs for building a SpatialExperiment
rescale_fiji_inputs | Write same-scale hires images for input to Fiji