Type: Package
Package: tidySingleCellExperiment
Title: Brings SingleCellExperiment to the Tidyverse
Version: 1.21.0
Authors@R: c(person("Stefano", "Mangiola", 
    comment=c(ORCID="0000-0001-7474-836X"),
    email="mangiolastefano@gmail.com",
    role=c("aut", "cre"))) 
Description: 'tidySingleCellExperiment' is an adapter that abstracts
        the 'SingleCellExperiment' container in the form of a 'tibble'.
        This allows *tidy* data manipulation, nesting, and plotting.
        For example, a 'tidySingleCellExperiment' is directly
        compatible with functions from 'tidyverse' packages `dplyr` and
        `tidyr`, as well as plotting with `ggplot2` and `plotly`. In
        addition, the package provides various utility functions
        specific to single-cell omics data analysis (e.g., aggregation
        of cell-level data to pseudobulks).
License: GPL-3
Depends: R (>= 4.4.0), SingleCellExperiment, ttservice (>= 0.4.0)
Imports: dplyr, tidyr, SummarizedExperiment, tibble, ggplot2, magrittr,
        rlang, purrr, pkgconfig, lifecycle, methods, utils, S4Vectors,
        tidyselect, ellipsis, vctrs, pillar, stringr, cli, fansi,
        Matrix, stats
Suggests: BiocStyle, testthat, knitr, markdown, rmarkdown,
        SingleCellSignalR, SingleR, scater, scran, tidyHeatmap, igraph,
        GGally, uwot, celldex, dittoSeq, plotly, rbibutils, prettydoc
VignetteBuilder: knitr
RdMacros: lifecycle
Biarch: true
biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression,
        SingleCell, GeneExpression, Normalization, Clustering,
        QualityControl, Sequencing
Encoding: UTF-8
RoxygenNote: 7.3.3
URL: https://github.com/stemangiola/tidySingleCellExperiment
BugReports: https://github.com/stemangiola/tidySingleCellExperiment/issues
Config/pak/sysreqs: make libicu-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:04:16 UTC
RemoteUrl: https://github.com/bioc/tidySingleCellExperiment
RemoteRef: HEAD
RemoteSha: 065fd602ad3faca0360c6c6150001f19f154f852
NeedsCompilation: no
Packaged: 2026-02-21 08:07:49 UTC; root
Author: Stefano Mangiola [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7474-836X>)
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Built: R 4.6.0; ; 2026-02-21 08:10:49 UTC; windows
