Package: scmap
Type: Package
Title: A tool for unsupervised projection of single cell RNA-seq data
Version: 1.33.0
Author: Vladimir Kiselev
Maintainer: Vladimir Kiselev <vladimir.yu.kiselev@gmail.com>
Authors@R: c(person("Vladimir", "Kiselev",
             email = "vladimir.yu.kiselev@gmail.com",
             role=c("cre", "aut")),
             person("Andrew", "Yiu",
             role=c("ctb")),
             person("Martin", "Hemberg",
             role=c("aut")))
Description: Single-cell RNA-seq (scRNA-seq) is widely used to
        investigate the composition of complex tissues since the
        technology allows researchers to define cell-types using
        unsupervised clustering of the transcriptome. However, due to
        differences in experimental methods and computational analyses,
        it is often challenging to directly compare the cells
        identified in two different experiments. scmap is a method for
        projecting cells from a scRNA-seq experiment on to the
        cell-types or individual cells identified in a different
        experiment.
License: GPL-3
Imports: Biobase, SingleCellExperiment, SummarizedExperiment,
        BiocGenerics, S4Vectors, dplyr, reshape2, matrixStats, proxy,
        utils, googleVis, ggplot2, methods, stats, e1071, randomForest,
        Rcpp (>= 0.12.12)
Depends: R(>= 3.4)
LinkingTo: Rcpp, RcppArmadillo
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
biocViews: ImmunoOncology, SingleCell, Software, Classification,
        SupportVectorMachine, RNASeq, Visualization, Transcriptomics,
        DataRepresentation, Transcription, Sequencing, Preprocessing,
        GeneExpression, DataImport
NeedsCompilation: yes
URL: https://github.com/hemberg-lab/scmap
BugReports: https://support.bioconductor.org/t/scmap/
Config/pak/sysreqs: libicu-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:39:19 UTC
RemoteUrl: https://github.com/bioc/scmap
RemoteRef: HEAD
RemoteSha: 4fdff8f55d5a6218cb54ef25c348a0e7b9aa6d5d
Packaged: 2026-03-04 08:40:18 UTC; root
Built: R 4.6.0; x86_64-w64-mingw32; 2026-03-04 08:42:04 UTC; windows
Archs: x64
