Package: scafari
Type: Package
Title: Analysis of scDNA-seq data
Version: 1.1.0
Authors@R: 
	person("Sophie", "Wind", , 
	 email = "sophie.wind@uni-muenster.de", 
	 role = c("aut", "cre"),
	 comment=c(ORCID="0009-0002-1174-8201"))
Description: Scafari is a Shiny application designed for the analysis
        of single-cell DNA sequencing (scDNA-seq) data provided in .h5
        file format. The analysis process is structured into the four
        key steps "Sequencing", "Panel", "Variants", and "Explore
        Variants". It supports various analyses and visualizations.
Depends: R (>= 4.4.0)
License: LGPL-3
Encoding: UTF-8
Imports: magrittr, shiny, shinycssloaders, DT, dplyr, waiter, ggplot2,
        tibble, stringr, reshape2, shinyjs, shinyBS, shinycustomloader,
        factoextra, markdown, plotly, ggbio, GenomicRanges, rhdf5,
        ComplexHeatmap, biomaRt, org.Hs.eg.db, SummarizedExperiment,
        SingleCellExperiment, S4Vectors, parallel, httr, jsonlite,
        scales, tidyr, txdbmaker, circlize, R.utils, dbscan, igraph,
        RANN
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
biocViews: Software, ShinyApps, SingleCell, Sequencing
BugReports: https://github.com/sophiewind/scafari/issues
URL: https://github.com/sophiewind/scafari
RoxygenNote: 7.3.2
Config/testthat/edition: 3
Config/pak/sysreqs: cmake libglpk-dev make libbz2-dev libicu-dev
        liblzma-dev libpng-dev libxml2-dev libssl-dev perl xz-utils
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:36:58 UTC
RemoteUrl: https://git.bioconductor.org/packages/scafari
RemoteRef: HEAD
RemoteSha: 0bee2a7ee3249da68973119937d4a61a5ea77080
NeedsCompilation: no
Packaged: 2026-03-04 09:21:56 UTC; root
Author: Sophie Wind [aut, cre] (ORCID: <https://orcid.org/0009-0002-1174-8201>)
Maintainer: Sophie Wind <sophie.wind@uni-muenster.de>
Built: R 4.6.0; ; 2026-03-09 11:05:06 UTC; windows
