# Differential Analysis of Single-cell Hi-C Data

## Documentation for package ‘scHiCcompare’ version 1.3.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

ODC.bandnorm_chr20_1 | scHi-C data from oligodendrocyte (ODC) cell type - chromosome 20 at 1 MB resolution
plot_HiCmatrix_heatmap | Plot Hi-C Interaction Matrix Heatmap
plot_imputed_distance_diagnostic | Plot Imputed Distance Diagnostic
print.scHiCcompare | Print method for 'scHiCcompare' objects
pseudo_bulkHic | Generate Pseudo-bulk Hi-C Data
read_files | Read Files for scHi-C Dataset
scHiC.table_MG_chr22 | scHi-C table from microglia (MG) cell type - chromosome 22 at 1 MB resolution
scHiC.table_ODC_chr22 | scHi-C table from oligodendrocyte (ODC) cell type - chromosome 22 at 1 MB resolution
scHiCcompare | ScHiCcompare: Differential Analysis of Single-Cell Hi-C Data
scHiCcompare_impute | Random Forest Imputation with Pooling options for scHi-C Data
scHiC_bulk_compare | Compare Bulk Hi-C Data
scHiC_table | Create scHiC Interaction Frequency Table