Package: scDblFinder
Type: Package
Title: scDblFinder
Version: 1.25.4
Authors@R: c(
    person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218")),
    person("Aaron", "Lun", email="infinite.monkeys.with.keyboards@gmail.com", role="ctb"))
URL: https://github.com/plger/scDblFinder,
        https://plger.github.io/scDblFinder/
BugReports: https://github.com/plger/scDblFinder/issues
Description: The scDblFinder package gathers various methods for the
        detection and handling of doublets/multiplets in single-cell
        sequencing data (i.e. multiple cells captured within the same
        droplet or reaction volume). It includes methods formerly found
        in the scran package, the new fast and comprehensive
        scDblFinder method, and a reimplementation of the Amulet
        detection method for single-cell ATAC-seq.
License: GPL-3 + file LICENSE
Depends: R (>= 4.0), SingleCellExperiment
Imports: igraph, Matrix, BiocGenerics, BiocParallel, BiocNeighbors,
        BiocSingular, S4Vectors, SummarizedExperiment, scran, scater,
        scuttle, bluster, methods, DelayedArray, xgboost (>= 3.1),
        stats, utils, MASS, IRanges, GenomicRanges, GenomeInfoDb,
        Rsamtools, rtracklayer
Suggests: BiocStyle, knitr, rmarkdown, testthat, scRNAseq, circlize,
        ComplexHeatmap, ggplot2, dplyr, viridisLite, mbkmeans
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.3
biocViews: Preprocessing, SingleCell, RNASeq, ATACSeq
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libglpk-dev make libharfbuzz-dev libbz2-dev
        libicu-dev libjpeg-dev liblzma-dev libpng-dev libtiff-dev
        libwebp-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-02-11 21:06:18 UTC
RemoteUrl: https://github.com/bioc/scDblFinder
RemoteRef: HEAD
RemoteSha: 4d322414bb076814aa2cc280cd4c6273a1654314
NeedsCompilation: no
Packaged: 2026-03-16 08:54:55 UTC; root
Author: Pierre-Luc Germain [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-3418-4218>),
  Aaron Lun [ctb]
Maintainer: Pierre-Luc Germain <pierre-luc.germain@hest.ethz.ch>
Built: R 4.6.0; ; 2026-03-16 08:58:49 UTC; windows
