# Data masks for SummarizedExperiment enabling dplyr-like manipulation

## Documentation for package ‘plyxp’ version 1.5.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

.assays | contextual plyxp pronouns
.assays_asis | contextual plyxp pronouns
.cols | contextual plyxp pronouns
.cols_asis | contextual plyxp pronouns
.rows | contextual plyxp pronouns
.rows_asis | contextual plyxp pronouns
arrange | arrange rows or columns of PlySummarizedExperiment
arrange.PlySummarizedExperiment | arrange rows or columns of PlySummarizedExperiment
as.data.frame | create data.frame
as.data.frame.PlySummarizedExperiment | create data.frame
assay-method | PlySummarizedExperiment Methods
assay<--method | PlySummarizedExperiment Methods
assays-method | PlySummarizedExperiment Methods
assays<--method | PlySummarizedExperiment Methods
assay_ctx | plyxp contexts
class_DF | S7 classes for vctrs and S4 Vectors
class_s4_vctrs | S7 classes for vctrs and S4 Vectors
class_vctrs | S7 classes for vctrs and S4 Vectors
colData-method | PlySummarizedExperiment Methods
colData<--method | PlySummarizedExperiment Methods
colnames-method | PlySummarizedExperiment Methods
cols | plyxp contexts
col_ctx | plyxp contexts
dimnames-method | PlySummarizedExperiment Methods
dimnames<--method | PlySummarizedExperiment Methods
dot-pronouns | contextual plyxp pronouns
filter | filter PlySummarizedExperiment
filter.PlySummarizedExperiment | filter PlySummarizedExperiment
group_by | apply groups to PlySummarizedExperiment
group_by.PlySummarizedExperiment | apply groups to PlySummarizedExperiment
group_data | get grouping data
group_data.PlySummarizedExperiment | get grouping data
group_split | Split a PlySummarizedExperiment based on groups
group_split.PlySummarizedExperiment | Split a PlySummarizedExperiment based on groups
group_vars | get PlySummarizedExperiment grouping Variables
group_vars.PlySummarizedExperiment | get PlySummarizedExperiment grouping Variables
list_unchop | unchop a list of objects
metadata-method | PlySummarizedExperiment Methods
metadata<--method | PlySummarizedExperiment Methods
mutate | Mutate a PlySummarizedExperiment object
mutate.PlySummarizedExperiment | Mutate a PlySummarizedExperiment object
ncol-method | PlySummarizedExperiment Methods
new_plyxp | SummarizedExperiment Shell Object
nrow-method | PlySummarizedExperiment Methods
PlySummarizedExperiment | SummarizedExperiment Shell Object
PlySummarizedExperiment-class | SummarizedExperiment Shell Object
PlySummarizedExperiment-methods | PlySummarizedExperiment Methods
plyxp | Modify SummarizedExperiment Object
plyxp-context | plyxp contexts
plyxp-printing | Printing within tibble with S4 objects
plyxp_on | Modify SummarizedExperiment Object
plyxp_pillar_format | Printing within tibble with S4 objects
pull | extract data from object
pull.PlySummarizedExperiment | extract data from object
rowData-method | PlySummarizedExperiment Methods
rowData<--method | PlySummarizedExperiment Methods
rownames-method | PlySummarizedExperiment Methods
rows | plyxp contexts
row_ctx | plyxp contexts
se | PlySummarizedExperiment Methods
se-method | PlySummarizedExperiment Methods
se<- | PlySummarizedExperiment Methods
se<--method | PlySummarizedExperiment Methods
select | select assays, rowData, and colData names
select.PlySummarizedExperiment | select assays, rowData, and colData names
se_simple | Plyxp Simple Example Summarized Experiment
show_tidy | Printing within tibble with S4 objects
slice | Slice a PlySummarizedExperiment
slice.PlySummarizedExperiment | Slice a PlySummarizedExperiment
summarise | Summarize PlySummarizedExperiment
summarise.PlySummarizedExperiment | Summarize PlySummarizedExperiment
summarize | Summarize PlySummarizedExperiment
summarize.PlySummarizedExperiment | Summarize PlySummarizedExperiment
ungroup | get grouping data
ungroup.PlySummarizedExperiment | apply groups to PlySummarizedExperiment
use_show_default | Printing within tibble with S4 objects
use_show_tidy | Printing within tibble with S4 objects
vctrs-vec_chop | chop a vector
vctrs-vec_recycle | Recycle a vector
vctrs-vec_rep | replicate a vector
vctrs_slice | Get observations of a vector
vectors | S7 classes for vctrs and S4 Vectors
vec_chop | chop a vector
vec_group_id | Create Group Indices
vec_group_loc | Create Group Indices
vec_phantom | Printing within tibble with S4 objects
vec_ptype2 | Create a common prototype of two vectors
vec_ptype_common | find the common ptype
vec_recycle | Recycle a vector
vec_rep | replicate a vector
vec_rep_each | replicate a vector
vec_slice | Get observations of a vector