# Multiview Intercellular SpaTial modeling framework

## Documentation for package ‘mistyR’ version 1.19.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

add_juxtaview | Generate and add a juxtaview to the current view composition
add_paraview | Generate and add a paraview to the current view composition
add_views | Add custom views to the current view composition
clear_cache | Clear cached objects
collect_results | Collect and aggregate results
create_initial_view | *Start here:* create a basic view composition with an intraview
create_view | Create a custom view
extract_signature | Extract signatures from the results
filter_views | Filter spatial units
plot_contrast_heatmap | Plot heatmap of local contrast between two views
plot_contrast_results | Plot heatmap of contrast between two result lists
plot_improvement_stats | Plot observed performance and improvement per target
plot_interaction_communities | Plot marker interaction communities
plot_interaction_heatmap | Plot importance heatmap for a view
plot_view_contributions | Plot view contributions per target
remove_views | Remove views from the current view composition
rename_view | Rename view in a view composition
run_misty | Train MISTy models
select_markers | Select a subset of markers in a view
synthetic | Synthetic benchmark data for mistyR