# Motif Analysis In Gene Regulatory Networks

## Documentation for package ‘magrene’ version 1.13.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

calculate_Z | Calculate Z-score for motif frequencies
find_bifan | Find bifan motifs
find_delta | Find delta motifs
find_lambda | Find lambda motifs
find_ppi_v | Find V motifs in protein-protein interactions
find_v | Find V motifs
generate_nulls | Generate null distributions of motif counts for each motif type
gma_grn | Sample soybean GRN
gma_paralogs | Soybean (Glycine max) duplicated genes
gma_ppi | Sample soybean PPI network
nulls | Null distribution of motif frequencies for vignette data set
sd_similarity | Calculate Sorensen-Dice similarity between paralogous gene pairs