Package: idr2d
Title: Irreproducible Discovery Rate for Genomic Interactions Data
Version: 1.25.0
Authors@R: 
    c(person(given = "Konstantin",
             family = "Krismer",
             role = c("aut", "cre", "cph"),
             email = "krismer@mit.edu",
             comment = c(ORCID = "0000-0001-8994-3416")),
      person(given = "David",
             family = "Gifford",
             role = c("ths", "cph"),
             email = "gifford@mit.edu",
             comment = c(ORCID = "0000-0003-1709-4034")))
Description: A tool to measure reproducibility between genomic
        experiments that produce two-dimensional peaks (interactions
        between peaks), such as ChIA-PET, HiChIP, and HiC. idr2d is an
        extension of the original idr package, which is intended for
        (one-dimensional) ChIP-seq peaks.
License: MIT + file LICENSE
URL: https://idr2d.mit.edu
Depends: R (>= 3.6)
Imports: dplyr (>= 0.7.6), futile.logger (>= 1.4.3), GenomeInfoDb (>=
        1.14.0), GenomicRanges (>= 1.30), ggplot2 (>= 3.1.1),
        grDevices, grid, idr (>= 1.2), IRanges (>= 2.18.0), magrittr
        (>= 1.5), methods, reticulate (>= 1.13), scales (>= 1.0.0),
        stats, stringr (>= 1.3.1), utils
Suggests: DT (>= 0.4), htmltools (>= 0.3.6), knitr (>= 1.20), rmarkdown
        (>= 1.10), roxygen2 (>= 6.1.0), testthat (>= 2.1.0)
VignetteBuilder: knitr
biocViews: DNA3DStructure, GeneRegulation, PeakDetection, Epigenetics,
        FunctionalGenomics, Classification, HiC
Encoding: UTF-8
RoxygenNote: 7.3.3
SystemRequirements: Python (>= 3.5.0), hic-straw
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev python3
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:54:10 UTC
RemoteUrl: https://github.com/bioc/idr2d
RemoteRef: HEAD
RemoteSha: 3edc0a1c0d36d8dfd12bac59d4771aeab7253cb8
NeedsCompilation: no
Packaged: 2026-02-21 07:03:21 UTC; root
Author: Konstantin Krismer [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0001-8994-3416>),
  David Gifford [ths, cph] (ORCID:
    <https://orcid.org/0000-0003-1709-4034>)
Maintainer: Konstantin Krismer <krismer@mit.edu>
Built: R 4.6.0; ; 2026-02-21 07:04:56 UTC; windows
