Package: geomeTriD
Type: Package
Title: A R/Bioconductor package for interactive 3D plot of epigenetic
        data or single cell data
Version: 1.5.1
Authors@R: c(person(given="Jianhong", family="Ou", email="jou@morgridge.org", 
        role=c("aut", "cre"), comment=c(ORCID="0000-0002-8652-2488")),
        person(given='Kenneth', family='Poss', email='kposs@morgridge.org',
        role=c('aut', 'fnd')))
Description: The geomeTriD (Three-Dimensional Geometry) Package
        provides interactive 3D visualization of chromatin structures
        using the WebGL-based 'three.js' (https://threejs.org/) or the
        rgl rendering library. It is designed to identify and explore
        spatial chromatin patterns within genomic regions. The package
        generates dynamic 3D plots and HTML widgets that integrate
        seamlessly with Shiny applications, enabling researchers to
        visualize chromatin organization, detect spatial features, and
        compare structural dynamics across different conditions and
        data types.
License: MIT + file LICENSE
Depends: R (>= 4.4.0)
Imports: aricode, BiocGenerics, Biostrings, clue, cluster, dbscan,
        future.apply, Seqinfo, GenomicRanges, graphics, grDevices,
        grid, htmlwidgets, igraph, InteractionSet, IRanges, MASS,
        Matrix, methods, plotrix, progressr, RANN, rgl, rjson,
        S4Vectors, scales, stats, trackViewer
Suggests: RUnit, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene,
        BSgenome.Hsapiens.UCSC.hg19, manipulateWidget, shiny,
        BiocStyle, knitr, rmarkdown, testthat
biocViews: Visualization
VignetteBuilder: knitr
RoxygenNote: 7.3.3
Encoding: UTF-8
URL: https://github.com/jianhong/geomeTriD
BugReports: https://github.com/jianhong/geomeTriD/issues
Config/pak/sysreqs: libfreetype6-dev libglpk-dev libglu1-mesa-dev make
        texlive libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libxml2-dev libgl1-mesa-dev libssl-dev xz-utils
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-11-24 17:29:31 UTC
RemoteUrl: https://github.com/bioc/geomeTriD
RemoteRef: HEAD
RemoteSha: f2c416014c074a29eb2f2e705b094caea7675a43
NeedsCompilation: no
Packaged: 2026-02-20 04:56:12 UTC; root
Author: Jianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>),
  Kenneth Poss [aut, fnd]
Maintainer: Jianhong Ou <jou@morgridge.org>
Built: R 4.6.0; ; 2026-02-20 05:00:45 UTC; windows
