Package: gdsfmt
Type: Package
Title: R Interface to CoreArray Genomic Data Structure (GDS) Files
Version: 1.47.0
Date: 2025-09-09
Depends: R (>= 2.15.0), methods
Suggests: parallel, digest, Matrix, crayon, RUnit, knitr, markdown,
        rmarkdown, BiocGenerics
Author: Xiuwen Zheng [aut, cre]
        (<https://orcid.org/0000-0002-1390-0708>), Stephanie Gogarten
        [ctb], Jean-loup Gailly and Mark Adler [ctb] (for the included
        zlib sources), Yann Collet [ctb] (for the included LZ4
        sources), xz contributors [ctb] (for the included liblzma
        sources)
Maintainer: Xiuwen Zheng <zhengx@u.washington.edu>
Description: Provides a high-level R interface to CoreArray Genomic
        Data Structure (GDS) data files. GDS is portable across
        platforms with hierarchical structure to store multiple
        scalable array-oriented data sets with metadata information. It
        is suited for large-scale datasets, especially for data which
        are much larger than the available random-access memory. The
        gdsfmt package offers the efficient operations specifically
        designed for integers of less than 8 bits, since a diploid
        genotype, like single-nucleotide polymorphism (SNP), usually
        occupies fewer bits than a byte. Data compression and
        decompression are available with relatively efficient random
        access. It is also allowed to read a GDS file in parallel with
        multiple R processes supported by the package parallel.
License: LGPL-3
Copyright: This package includes the sources of CoreArray C++ library
        written by Xiuwen Zheng (LGPL-3), zlib written by Jean-loup
        Gailly and Mark Adler (zlib license), LZ4 written by Yann
        Collet (simplified BSD), and liblzma written by Lasse Collin
        and other xz contributors (public domain).
VignetteBuilder: knitr
ByteCompile: TRUE
BugReports: https://github.com/zhengxwen/gdsfmt/issues
URL: https://github.com/zhengxwen/gdsfmt
biocViews: Infrastructure, DataImport
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:23:33 UTC
RemoteUrl: https://github.com/bioc/gdsfmt
RemoteRef: HEAD
RemoteSha: 650aa25b78fa8958b5bb6e40d13b1789204b3cae
NeedsCompilation: yes
Packaged: 2026-02-27 08:18:54 UTC; root
Built: R 4.6.0; x86_64-w64-mingw32; 2026-02-27 08:22:03 UTC; windows
Archs: x64
