Package: epivizr
Maintainer: Hector Corrada Bravo <hcorrada@gmail.com>
Author: Hector Corrada Bravo, Florin Chelaru, Llewellyn Smith, Naomi
        Goldstein, Jayaram Kancherla, Morgan Walter, Brian Gottfried
Version: 2.41.0
License: Artistic-2.0
Title: R Interface to epiviz web app
Description: This package provides connections to the epiviz web app
        (http://epiviz.cbcb.umd.edu) for interactive visualization of
        genomic data. Objects in R/bioc interactive sessions can be
        displayed in genome browser tracks or plots to be explored by
        navigation through genomic regions. Fundamental Bioconductor
        data structures are supported (e.g., GenomicRanges and
        RangedSummarizedExperiment objects), while providing an easy
        mechanism to support other data structures (through package
        epivizrData). Visualizations (using d3.js) can be easily added
        to the web app as well.
VignetteBuilder: knitr
Depends: R (>= 3.5.0), methods
Imports: epivizrServer (>= 1.1.1), epivizrData (>= 1.3.4),
        GenomicRanges, S4Vectors, IRanges, bumphunter, GenomeInfoDb
Suggests: testthat, roxygen2, knitr, Biobase, SummarizedExperiment,
        antiProfilesData, hgu133plus2.db, Mus.musculus, BiocStyle,
        minfi, rmarkdown
Collate: 'EpivizChartMgr-class.R' 'EpivizApp-class.R'
        'EpivizChart-class.R' 'restartEpiviz.R' 'settings_utils.R'
        'startEpiviz.R' 'vignette_data.R'
biocViews: Visualization, Infrastructure, GUI
Video: https://www.youtube.com/watch?v=099c4wUxozA
RoxygenNote: 7.1.0
Config/pak/sysreqs: make libbz2-dev liblzma-dev libpng-dev libxml2-dev
        libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:16:45 UTC
RemoteUrl: https://github.com/bioc/epivizr
RemoteRef: HEAD
RemoteSha: ba79c0b6cf0a226e3f2ad03e2c53315cef57446c
NeedsCompilation: no
Packaged: 2026-02-22 08:11:45 UTC; root
Built: R 4.6.0; ; 2026-02-22 08:15:26 UTC; windows
