# Single-cell Immune Repertoire Trajectory Analysis in R

## Documentation for package ‘dandelionR’ version 1.3.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

demo_airr | Example AIRR Dataset for V(D)J Analysis
demo_sce | Example SCE Dataset that does not contain V(D)J information
differentiationProbabilities | Compute Branch Probabilities Using Markov Chain
markovProbability | Markov Chain Construction and Probability Calculation
miloUmap | Perform UMAP on the Adjacency Matrix of a Milo Object
projectProbability | Project Probabilities from Markov Chain to Pseudobulks
projectPseudotimeToCell | Project Pseudotime and Branch Probabilities to Single Cells
project_single_value | Function to project pseudobulk-level values to single-cell level
sce_vdj | Example Dataset for V(D)J Analysis
setupVdjPseudobulk | Preprocess V(D)J Data for Pseudobulk Analysis
vdjPseudobulk | Generate Pseudobulk V(D)J Feature Space