Package: chromVAR
Type: Package
Title: Chromatin Variation Across Regions
Version: 1.33.0
Authors@R: c(
    person("Alicia", "Schep", email = "aschep@gmail.com", role = c("aut","cre")),
    person("Jason", "Buenrostro", role = "ctb"),
    person("Caleb", "Lareau", role = "ctb"),
    person("William","Greenleaf", role = "ths"),
    person("Stanford University", role = "cph"))
Description: Determine variation in chromatin accessibility across sets
        of annotations or peaks. Designed primarily for single-cell or
        sparse chromatin accessibility data, e.g. from scATAC-seq or
        sparse bulk ATAC or DNAse-seq experiments.
License: MIT + file LICENSE
Imports: IRanges, Seqinfo, GenomicRanges, ggplot2, nabor, BiocParallel,
        BiocGenerics, Biostrings, TFBSTools, Rsamtools, S4Vectors,
        methods, Rcpp, grid, plotly, shiny, miniUI, stats, utils,
        graphics, DT, Rtsne, Matrix, SummarizedExperiment,
        RColorBrewer, BSgenome
Depends: R (>= 3.5.0)
Suggests: JASPAR2016, BSgenome.Hsapiens.UCSC.hg19, readr, testthat,
        knitr, rmarkdown, pheatmap, motifmatchr
biocViews: SingleCell, Sequencing, GeneRegulation, ImmunoOncology
LazyData: TRUE
LinkingTo: Rcpp, RcppArmadillo
SystemRequirements: C++11
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Config/pak/sysreqs: make libgsl0-dev libbz2-dev libicu-dev liblzma-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:41:16 UTC
RemoteUrl: https://github.com/bioc/chromVAR
RemoteRef: HEAD
RemoteSha: 17308586c0f90522de2ed4297f6d7348acf402c6
NeedsCompilation: yes
Packaged: 2025-10-30 04:35:32 UTC; root
Author: Alicia Schep [aut, cre],
  Jason Buenrostro [ctb],
  Caleb Lareau [ctb],
  William Greenleaf [ths],
  Stanford University [cph]
Maintainer: Alicia Schep <aschep@gmail.com>
Built: R 4.6.0; x86_64-w64-mingw32; 2025-10-30 04:39:29 UTC; windows
Archs: x64
