Package: biscuiteer
Type: Package
Title: Convenience Functions for Biscuit
Description: A test harness for bsseq loading of Biscuit output,
        summarization of WGBS data over defined regions and in mappable
        samples, with or without imputation, dropping of mostly-NA
        rows, age estimates, etc.
Version: 1.25.1
Date: 2026-04-09
Authors@R: c(person("Tim", "Triche", role = c("aut")),
             person("Wanding", "Zhou", role = c("aut")),
             person("Benjamin", "Johnson", role = c("aut")),
             person("Jacob", "Morrison", role = c("aut", "cre"),
                    email = "jacob.morrison@vai.org"),
            person("Lyong", "Heo", role = c("aut")),
            person("James", "Eapen", role = c("aut")))
URL: https://github.com/trichelab/biscuiteer
BugReports: https://github.com/trichelab/biscuiteer/issues
License: GPL-3
Depends: R (>= 4.1.0), biscuiteerData, bsseq
Imports: readr, qualV, Matrix, impute, HDF5Array, S4Vectors, Rsamtools,
        data.table, Biobase, GenomicRanges, IRanges, BiocGenerics,
        VariantAnnotation, DelayedMatrixStats, SummarizedExperiment,
        GenomeInfoDb, Mus.musculus, Homo.sapiens, matrixStats,
        rtracklayer, QDNAseq, dmrseq, methods, utils, R.utils, gtools,
        BiocParallel
Suggests: covr, knitr, rmarkdown, markdown, rlang, scmeth, pkgdown,
        roxygen2, testthat, QDNAseq.hg19, QDNAseq.mm10, BiocStyle
biocViews: DataImport, MethylSeq, DNAMethylation
Encoding: UTF-8
RoxygenNote: 7.2.3
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev libx11-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-09 18:36:00 UTC
RemoteUrl: https://github.com/bioc/biscuiteer
RemoteRef: HEAD
RemoteSha: fd5d14ac435ab2f27de45fbd864e38e23b6ebe1c
NeedsCompilation: no
Packaged: 2026-04-10 09:35:24 UTC; root
Author: Tim Triche [aut],
  Wanding Zhou [aut],
  Benjamin Johnson [aut],
  Jacob Morrison [aut, cre],
  Lyong Heo [aut],
  James Eapen [aut]
Maintainer: Jacob Morrison <jacob.morrison@vai.org>
Built: R 4.6.0; ; 2026-04-10 09:44:15 UTC; windows
