Package: RolDE
Type: Package
Title: RolDE: Robust longitudinal Differential Expression
Version: 1.15.0
Description: RolDE detects longitudinal differential expression between
        two conditions in noisy high-troughput data. Suitable even for
        data with a moderate amount of missing values.RolDE is a
        composite method, consisting of three independent modules with
        different approaches to detecting longitudinal differential
        expression. The combination of these diverse modules allows
        RolDE to robustly detect varying differences in longitudinal
        trends and expression levels in diverse data types and
        experimental settings.
Authors@R: c(person("Tommi", "Valikangas", email = "tsvali@utu.fi", role=c("aut")),
    person("Medical Bioinformatics Centre", email = "mbc@utu.fi", role=c("cre")))
License: GPL-3
Imports: stats, methods, ROTS, matrixStats, foreach, parallel,
        doParallel, doRNG, rngtools, SummarizedExperiment, nlme,
        qvalue, grDevices, graphics, utils
Depends: R (>= 4.2.0)
Encoding: UTF-8
LazyData: FALSE
RoxygenNote: 7.1.2
Suggests: knitr, printr, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: StatisticalMethod, Software, TimeCourse, Regression,
        Proteomics, DifferentialExpression
NeedsCompilation: no
URL: https://github.com/elolab/RolDE
BugReports: https://github.com/elolab/RolDE/issues
Config/pak/sysreqs: cmake make libicu-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:16:17 UTC
RemoteUrl: https://github.com/bioc/RolDE
RemoteRef: HEAD
RemoteSha: 30dfeba6ca661153a2dca0c97e67d9ef03ce30ef
Packaged: 2026-03-10 08:40:10 UTC; root
Author: Tommi Valikangas [aut],
  Medical Bioinformatics Centre [cre]
Maintainer: Medical Bioinformatics Centre <mbc@utu.fi>
Built: R 4.6.0; ; 2026-03-10 08:42:08 UTC; windows
